Protein Info for mRNA_7077 in Rhodosporidium toruloides IFO0880

Name: 15445
Annotation: K18789 XGD1 xylogalacturonan beta-1,3-xylosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1322 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF03016: Exostosin" amino acids 1014 to 1264 (251 residues), 111.5 bits, see alignment E=2.5e-36

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1322 amino acids)

>mRNA_7077 K18789 XGD1 xylogalacturonan beta-1,3-xylosyltransferase (Rhodosporidium toruloides IFO0880)
MPSLRLSSLVRLGSLAFLTLFILHFLSSFSSPSPSPSSYYEPLPGEAADPGWGERLGLDH
YADWEEGVRGRVGAGLGKLKDGVGMITGFGGRGAKLGSLYELVATSNASPGPSYYDARTS
MDKIKLTSTRVLGHGGKSSSSSSSSADDAADTISFASRDRRHILVTGGFGSIGKAVVRDL
LLTTGGSSSRVDAWGAPTETADELTWEEDVLVTILDVADRSAELNFLLQSALLDKPGGAG
KIKGTDPRTQAFSASERSVENFRKSGKLRVVVGDVRDEELVKSILDPAGTTHTDLPADQQ
AAALLNPKLGRPKQKGHTLATTVIPPVTGIVHLAAYSPKACRTNPVDCRSVEQDGVSAIL
EAIKREGMEKQAELVERPWVVVPRRADRWDEASIADNGNSSTLTVQVPETAIKAFTTKRP
LHSLLLELPSAFSIIGDPYASRFDPVPHIVHSALGNLPINVYTSSTETEPFLSIDDASRS
IIQGARMLDVASSKEYLKSLGFVAELEIVGPPPSTSSKRPSPLAELAQTAISLIQSESPY
AEIETVRPAVASPSESRFHTSETSLRKTASKVLGFTPTISVHTALKSYISSILRLQTTHL
SAKINVACSSPPSTPVLEEGLLALSGCNVQLLTLIEGAYYTLGCSQGLEGEHDEPIALVP
AVPYKEGVRGVEIIAERGLENKVDIQMRCPVVGKDGKLVPGESEIVMWADTVDGGEFAEL
NKEGAHPIAEWYTIDFVQRDSRSFTMTLPPTEGVPEGEEPKRRLTFRDPTSTKRSLLFQP
TGEDAHALLWKFNPICCPATASRRKDVWDFFKEDPLITSQVAYPSEDGRTTLGESTLAVK
RCHELRAEHDRITKLQQRVRSGPSSVSTSDVCRPTYGEALTWTAKDQQTCSSDCSAPIAC
IASEDCKCTRDRCGDSRPESPFPRVAYTDRKSFPATDAPAQSLAERVAALPWDALVLPGA
KDAFNLGVDRLPKGHVVQLPDTIDNHLKSPACFDLERSPLPFMGDHYLVEAMKNRSVTLD
EASFVLVPYYQGCYYNYLQENTFKKLADTVGFAETAIATNPAITGDRIVIPFTHDFGSCT
GWWQKLEDVLGHSPPSPMDQAVAWQVNGDYNTRCIKVDRDVVVPAVTKHTKALFETFKTP
ADVAPVNSRKHLAFFAGGVRGFGAIARTKIGCGRTGQDPNSAILYQQFSPGQRYLGTLNA
SKFCLLPRGIPAWMTRTFEAIYAGCIPAFIVDRNLFPFQDILDYSRFSVTIPEADAHRIE
EILSAYTPEQLSELQANLVKVREAFLFKDGEEWERRGPLFFSLVSMQMRLPLQYPEVGSC
TA