Protein Info for mRNA_7106 in Rhodosporidium toruloides IFO0880

Name: 15474
Annotation: K11313 SUPT3H, SPT3 transcription initiation protein SPT3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 421 PF02269: TFIID-18kDa" amino acids 11 to 97 (87 residues), 85.5 bits, see alignment E=1.1e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (421 amino acids)

>mRNA_7106 K11313 SUPT3H, SPT3 transcription initiation protein SPT3 (Rhodosporidium toruloides IFO0880)
MASLTQKSRYVYSPEISSMVYVFCGIKDADEELVQFIEEVVKKEMVELVVQARAQASRRG
GRAISVEDLIFLVRHDRAKVNRLKSYLSWKDVRKKMKEPEADDEIDGMEEPVSDKTLKVI
KTTVRLPWELSDAWADYLHGEDEPEDDEAEAYEVNKQRLREADMLTSKMSRDEYEQYSQA
RQASFVYRKNKKFRDFLALPAMLDVVFPSDEVIDILGFLAYECVRALCDAGIANKKVMEA
AAARVKEADRRKEIREGKKRGREEGDAERTGEDEAMEDATAGSSPGKEGMITWRKSRSAS
LSKRGRKGFEAPTSTEKQQQPAPSPRNKPLEIPTSLFSAPLPETTQPGPTATLTTTGSTI
VSAEGGGADPGTTIVAEIPLLLQLQDVMQGFHAVQHTQEALKTSGMRNWRGGLTRVSNRL
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