Protein Info for mRNA_7129 in Rhodosporidium toruloides IFO0880

Name: 15497
Annotation: K10627 RAD18 E3 ubiquitin-protein ligase RAD18

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 573 PF11789: zf-Nse" amino acids 39 to 81 (43 residues), 28.8 bits, see alignment 2.6e-10 PF04564: U-box" amino acids 41 to 108 (68 residues), 23.7 bits, see alignment E=1.3e-08 PF13923: zf-C3HC4_2" amino acids 42 to 81 (40 residues), 36.4 bits, see alignment 1.1e-12 PF13639: zf-RING_2" amino acids 42 to 81 (40 residues), 30.5 bits, see alignment 1.1e-10 PF13445: zf-RING_UBOX" amino acids 43 to 79 (37 residues), 30.9 bits, see alignment 6.9e-11 PF00097: zf-C3HC4" amino acids 43 to 81 (39 residues), 26.1 bits, see alignment 1.9e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (573 amino acids)

>mRNA_7129 K10627 RAD18 E3 ubiquitin-protein ligase RAD18 (Rhodosporidium toruloides IFO0880)
MAPKTKKGKAGQTDAELKAAGQLDTASDFTSPSLSALESSLRCPICAEFFTAPVILTNCS
HSFDSRCLRDYLAVHKRCPSCLAETDESRIRKNLALQEVLNAWQSAREEILRLEGAASSA
STRAAAPSRQSPLSPTPSSTRRTRTSVYSTASASKGKRKAASSPSVKPEPESDDDIIGID
DSSDIEIVEDESSSAIRPPKKRVKGANGQAKAAADPTDPNLIVTCPICAGSFKNSLVALH
VEKCNGVAPASTGAAAWGNLMNGGSSGASQVAGNESPSRANKLDTTKYLPLTSYSYKSVS
ELTEMLKEYALPTTVPPTCLTTDSKLSIFQRRHRQFLILWNANADLDPSDPKHKTPRQLR
EELSRWEKVQDANGLASGAGAAGQAEAKGGPVSKEHATKYAPQFRDLIAQARASTQAAKE
KQRAAAEPVPDKALTPPVEAPTAPSDVAVAPQPPAPPSPPARKRSVRLVSPQRSPSPEFI
AQESPASSPSPMLSPRHAGAESDPPAGSEGGKETKDMGRRRRETSPYNPEGPRPSQRNRE
EERMFAEMYGGKEDEEEETDGPEEREVGEALEA