Protein Info for mRNA_7132 in Rhodosporidium toruloides IFO0880

Name: 15500
Annotation: K16938 SEPT3_9_12 septin 3/9/12

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 321 PF00735: Septin" amino acids 35 to 310 (276 residues), 375.7 bits, see alignment E=3.7e-116 PF01926: MMR_HSR1" amino acids 40 to 137 (98 residues), 32 bits, see alignment E=2.8e-11 PF04548: AIG1" amino acids 40 to 121 (82 residues), 27.6 bits, see alignment E=4.7e-10

Best Hits

Swiss-Prot: 63% identical to SPN2_SCHPO: Septin homolog spn2 (spn2) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: None (inferred from 79% identity to scm:SCHCODRAFT_73980)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (321 amino acids)

>mRNA_7132 K16938 SEPT3_9_12 septin 3/9/12 (Rhodosporidium toruloides IFO0880)
MAAAAVENPVELTRLNSYVGFDSLPQQIESKLLKRGFAFNVIVVGQTGLGKSTLINTIFA
SHLIDTKGRFEPDEPIRQTTEIQAVSHVVQENNVRLRLNIVDTPGYGDLVNNENCWDPIV
KYIKDQHSAYLRKELTAMRDKHIADTRIHACLYFIAPTGHTLKAIDIVVMKKLSEVVNVV
PVIAKSDSLTLEEREVFKERIRAELAHNNIRVYPFDTEDHDDEERGLNSAIRSMMPFAVV
GSERNVIVDGKPVRGRKNRWGVINVENEQHCDFNYLRNFLTRTHLQDLIETTALVHYEAF
RSKQLLALKESSAAKAQQAHA