Protein Info for mRNA_7158 in Rhodosporidium toruloides IFO0880

Name: 15526
Annotation: K09529 DNAJC9 DnaJ homolog subfamily C member 9

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 791 transmembrane" amino acids 97 to 116 (20 residues), see Phobius details amino acids 172 to 192 (21 residues), see Phobius details amino acids 267 to 285 (19 residues), see Phobius details amino acids 290 to 311 (22 residues), see Phobius details PF10332: DUF2418" amino acids 253 to 347 (95 residues), 89.5 bits, see alignment E=1.7e-29 PF00226: DnaJ" amino acids 482 to 550 (69 residues), 69.7 bits, see alignment E=1.9e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (791 amino acids)

>mRNA_7158 K09529 DNAJC9 DnaJ homolog subfamily C member 9 (Rhodosporidium toruloides IFO0880)
MPATPLQLRSRGSQTGLNTPQRADSPFRPSVATESRRALGLARDPGTPVGRLLASEGVAV
RSPRRVRQRSWQERARDWPSNALLSLETSIQLLSFDAAGYPLGIALNILHFLVRLPGFYS
ALPSFSSIFRSSASTASRYARRVDFDLADADARLEALQRQTRSGRAGGWSWWAWWLSVGL
ILLSVGNAVYLASRRRKYQMVLRKDPIASPNARSAQLDFSPTKRRRSLANSVKQSVKNLV
WRTQPEEPHVYPVQELDVWTPERVKWSLRIFTVYSPPIALMYHFLSPSNFLAFLLCGTLF
TLQTFLLVHLYSTLVTDRAALQAEVMHEYNAKFVNPRVFVAKRDACVSTSQAEMVRPEDW
LAAGPSSSRRRVTAQETESGDEVIRAGSGRKVRRRQSEMPARTSSLQLQEDEEAVDSPAP
SRRPISFVISQSQNNFTASHLVRGCRPSSRLAPAGPLVLLLVTMSDDPADTFFPDADEIP
SLYDVLGVSSEATDDEIKKAYRRLSLLNHPDKVAASASSPEDLAAATLKFQQIGFAYTVL
KDAARREKYDLTGSTMEMSAEGAKTEAEWRDYFRELWTGEVSAQTMDDFAKKYQGSDEER
RDILEAYKNSSGDIESILNSVMCATIADEDRFVKLINDAIAAKEIKATPAWTKSSKDTQG
KEKRKKKADKEAKEAEELAKELGVHDKLYGNGSSASKGGKGKGKGKKADAEDDEASLRAL
IQGNQAKRMNSLIDSLEAKYAAAEAKKGKKRSSTGGEDGAKGGKKAKKEAEPTEEEFAAI
QAKMDARRGKK