Protein Info for mRNA_7173 in Rhodosporidium toruloides IFO0880

Name: 15541
Annotation: K02891 RP-L22e, RPL22 large subunit ribosomal protein L22e

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 127 PF01776: Ribosomal_L22e" amino acids 18 to 122 (105 residues), 144.8 bits, see alignment E=6.1e-47

Best Hits

Swiss-Prot: 57% identical to RL22_SCHPO: 60S ribosomal protein L22 (rpl22) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K02891, large subunit ribosomal protein L22e (inferred from 58% identity to cci:CC1G_03630)

Predicted SEED Role

"LSU ribosomal protein L22e"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (127 amino acids)

>mRNA_7173 K02891 RP-L22e, RPL22 large subunit ribosomal protein L22e (Rhodosporidium toruloides IFO0880)
MAPSVVGLKKKGVAKTQPHKFYIDYSGPANDKIFDAAAFEKYLVEHIKVEGKTGQLGENV
KLQREGSGKLSVTSSIPFSKRYLKYLTKRFLKANLMREWLRVVSTGKDTYTLKFYNLSFD
NAGEEEA