Protein Info for mRNA_7208 in Rhodosporidium toruloides IFO0880

Name: 15576
Annotation: K03361 CDC4 F-box and WD-40 domain protein CDC4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1125 PF00646: F-box" amino acids 425 to 463 (39 residues), 37.5 bits, see alignment (E = 4.2e-13) PF12937: F-box-like" amino acids 426 to 466 (41 residues), 37.7 bits, see alignment (E = 3.8e-13) PF00400: WD40" amino acids 640 to 672 (33 residues), 22.7 bits, see alignment (E = 3.5e-08) amino acids 677 to 730 (54 residues), 28.6 bits, see alignment 4.8e-10 amino acids 762 to 795 (34 residues), 22 bits, see alignment (E = 5.8e-08) amino acids 799 to 837 (39 residues), 31.8 bits, see alignment (E = 4.7e-11) amino acids 881 to 916 (36 residues), 24.8 bits, see alignment (E = 7.6e-09)

Best Hits

Predicted SEED Role

"High-affnity carbon uptake protein Hat/HatR" in subsystem CO2 uptake, carboxysome or Carboxysome

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1125 amino acids)

>mRNA_7208 K03361 CDC4 F-box and WD-40 domain protein CDC4 (Rhodosporidium toruloides IFO0880)
MDVDRTSAGTTEPLGQHVESVVTRVTTTTAHARPSQPRPAGHEREVALDDAASPGTPGDY
ALLHFAPATTTTVVTTTTQTTTHFAPIRIPKSRPIRAVHSSFSGPSGDAAMRHGSPVTSR
TSLRQLIDESSEAGPSSSALPLDPKMYPLSSEPWPGSMRQFQLALGDMSATYVEDPAEAP
ALAGGGVGWHASGGPPRSAKGKGKARIEDESDISPLTGGAEGLSRNERGPLHQRRLSRRP
RAGHGQDALDEETDRVDDVALPLRHTSPGPPRKRARADSTSQASVDGDASVAATGRRLSQ
AHLQAHTTSMGPPATVVSAAALPSPNQSPPSPVPTFGGEDSQELRDDDVDVAAQAGAVAL
RQSFDFGSGIGLSGLLSLPDLVKSFDQLQPTLQSYLLFQLLRRSSIPVLQSVNQVVEHAL
RRDFLSDLPPELGTSILSYFDVRDLCRASLVSKTWRRLIDGEWRVWKDKLVAEGFWIGDG
SDEREARDISRGGKEDLFLKRWKAGVWDKKKRSKWSGRIHVDDLYGGGPTPQGSSAVNHR
LASPSSSREASPIPPSHFVHPFKLLYRHRVLIRRNWQQNTPKRLNFPYSSSPQAGNAGNA
AANTNNHVVTCLQFDKDKIVSSSDDHSISVFETQTGALKAVLGGHEGGVWALQYVGNVLV
SGSTDRTVRVWDLDTYRCTHVFIGHTSTVRCLQIVEPQNVNPDPSGPPIWEPPYPIIVTG
SRDHTLRVWKLPMPGKDADYEPPYPESPSEEAAQPAENPFHLRHLRGHTQAVRALAAHGR
TLVSGSYDMDVRVWDTMTGECRHILQGHTQKVYSVVYDPTRKQVASGSMDGTVRLWSTET
GELRGVLEGHASLVGLLGLTHRNLVSAAADWTLRIWDPDTGACRHSLAAHQGAITCFQHD
EDKVISGSDGTLKMWDVRTGAFVRDLLTNLTGVWQVSFDQRFCVAAVSRNGRSEFEVLDF
GSVEPERPSRAKRPSRTPRIKTEDSDAELPGAFTDAGRDVAMSDAAGGEDPITPGAGTSN
AAPPAPRLRAGDFSRLPSGSSSAASSLLAQDSTPSRQAGSDGSSRRTVRRLHGSRDLQAQ
ASTSTQAMDVERDGSDDEDANSDDEVMSALVKSEEDDNDLLDASR