Protein Info for mRNA_7212 in Rhodosporidium toruloides IFO0880

Name: 15580
Annotation: KOG3764 Vesicular amine transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 475 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details amino acids 59 to 81 (23 residues), see Phobius details amino acids 89 to 106 (18 residues), see Phobius details amino acids 112 to 137 (26 residues), see Phobius details amino acids 148 to 168 (21 residues), see Phobius details amino acids 177 to 197 (21 residues), see Phobius details amino acids 277 to 300 (24 residues), see Phobius details amino acids 312 to 334 (23 residues), see Phobius details amino acids 341 to 359 (19 residues), see Phobius details amino acids 365 to 383 (19 residues), see Phobius details amino acids 403 to 426 (24 residues), see Phobius details amino acids 435 to 458 (24 residues), see Phobius details PF07690: MFS_1" amino acids 25 to 308 (284 residues), 97.8 bits, see alignment E=1.4e-31 amino acids 282 to 451 (170 residues), 68 bits, see alignment E=1.5e-22 PF12832: MFS_1_like" amino acids 208 to 435 (228 residues), 35.5 bits, see alignment E=1.2e-12 PF13347: MFS_2" amino acids 263 to 378 (116 residues), 28.1 bits, see alignment E=1.7e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (475 amino acids)

>mRNA_7212 KOG3764 Vesicular amine transporter (Rhodosporidium toruloides IFO0880)
MLSFSDRPPVFLRWRSSTTLILLAVFIGVLVDTAAFSIAAPIIPFRLEQLGYESVGDKVG
WIIACFGAGLIAATPIAVYVGSKVSNRQLPLLAGLLSMAGALILFMESDSFVAMLIARLW
QGMSGTILWTFGLALVIDSVPEHRVGASLGTVMAGFSAGEAIGPPIGGVLYRHLGFRAPT
VFLLILLGFDLVLRLAIVEKKTALKWIEKGVVIPGFSAPNYPAAHDEVLEPKDVSPAATI
PEGAAEKGQLAVSQDFASTGSNLWRTTWRLVQDPRASVAIGIAMLYGVVFGLLDTGMVLY
VKDQYGLDEQGAGLIFIAVVVPSFIVSPLAGWFTDRYGSKWPATLGVTMFVATYPLLLIE
GPLPLFVFFLVLVGVGLSCVVTPTTHDLNVAAAATPGAEPAQVFALFNLAFSLGSFIGPI
CGGQIMHSMSTRNGFVTVTSIGTALVALAAPLVLVYTGGRLRCGVLRRERDENAT