Protein Info for mRNA_7213 in Rhodosporidium toruloides IFO0880

Name: 15581
Annotation: K14636 SLC18A3, VACHT MFS transporter, DHA1 family, solute carrier family 18 (vesicular acetylcholine transporter), member 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 506 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details transmembrane" amino acids 58 to 80 (23 residues), see Phobius details amino acids 88 to 106 (19 residues), see Phobius details amino acids 117 to 136 (20 residues), see Phobius details amino acids 148 to 169 (22 residues), see Phobius details amino acids 177 to 197 (21 residues), see Phobius details amino acids 278 to 301 (24 residues), see Phobius details amino acids 313 to 334 (22 residues), see Phobius details amino acids 342 to 360 (19 residues), see Phobius details amino acids 364 to 383 (20 residues), see Phobius details amino acids 422 to 441 (20 residues), see Phobius details amino acids 453 to 476 (24 residues), see Phobius details PF07690: MFS_1" amino acids 24 to 382 (359 residues), 129.6 bits, see alignment E=2.1e-41 amino acids 282 to 488 (207 residues), 50.7 bits, see alignment E=2e-17 PF13347: MFS_2" amino acids 259 to 389 (131 residues), 36.4 bits, see alignment E=3.6e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (506 amino acids)

>mRNA_7213 K14636 SLC18A3, VACHT MFS transporter, DHA1 family, solute carrier family 18 (vesicular acetylcholine transporter), member 3 (Rhodosporidium toruloides IFO0880)
MVDNARPPLFLRARASTTLILLAVFLAVLVDTAAYSIAAPIIPFRLERLGYRNVGSKVGW
IIACFGAGLIVATPIAVYIASKTSNRQIPLLGGAVSMAGSIVLFMECKGFAPMLVARLWQ
GLSGTILWTFGLALVIDSVPEQHVGKSLGIVMSGLSVGEAIGPPIGGALYRHLGWRAPFV
FLLILLVVDIVLRLLIVEKKTALMWIKRGVTIRGFSAPDYPPPNSVSKEEAVVPLAPSST
VTSSEATEVAATVLPKPEADGANLWETMWRLVHNPRAAVALSMAFLYGADFGLLEAGMVL
YVKEHYGLDEQGAGLIFLAVVIPSFIIAPLAGWLTDLYGSKWPATVGMVIVTAAYALLII
RGPLALFIFFLVLIGASRFSLIAQYADTSIRAGVGLAAVSTPTTHDLNVAATATPGATSA
QIFAAFNLAFSLGSFVGPIIGGELMSGLSTRNGFVAIVVIGAGLVALCTPFVLLFTGGRL
GAKRPETKEKELAGVEEIPLRAVQEK