Protein Info for mRNA_7221 in Rhodosporidium toruloides IFO0880

Name: 15589
Annotation: K02133 ATPeF1B, ATP5B, ATP2 F-type H+-transporting ATPase subunit beta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 539 TIGR01039: ATP synthase F1, beta subunit" amino acids 67 to 531 (465 residues), 827.2 bits, see alignment E=1.8e-253 PF02874: ATP-synt_ab_N" amino acids 70 to 137 (68 residues), 75.8 bits, see alignment E=3.1e-25 PF00006: ATP-synt_ab" amino acids 194 to 413 (220 residues), 209.8 bits, see alignment E=4e-66

Best Hits

Swiss-Prot: 81% identical to ATPB_NEUCR: ATP synthase subunit beta, mitochondrial (atp-2) from Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)

KEGG orthology group: K02133, F-type H+-transporting ATPase subunit beta [EC: 3.6.3.14] (inferred from 80% identity to scm:SCHCODRAFT_65406)

MetaCyc: 77% identical to ATP synthase subunit beta, mitochondrial (Homo sapiens)

Predicted SEED Role

"ATP synthase beta chain (EC 3.6.3.14)" in subsystem F0F1-type ATP synthase (EC 3.6.3.14)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.14

Use Curated BLAST to search for 3.6.3.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (539 amino acids)

>mRNA_7221 K02133 ATPeF1B, ATP5B, ATP2 F-type H+-transporting ATPase subunit beta (Rhodosporidium toruloides IFO0880)
MLRGARVQTLNRAALRAARKNQAVFAAARNLATKASPAQVASAAIPRPAQLKAAAPRAYA
TAAGNKVGKIKQVIGAVVDVQFDTEDLPPILNALEIQGTPQRLVLEVAMHLGENTVRTIA
MDGTEGLVRGQDCVDTGAPIQIPVGPGCLGRIINVIGEPIDERGPIKAVKTLPIHADPPA
YVDQSTAPEVLETGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSV
FTGVGERTREGNDLYHEMIETGVIQLENDKSKCALVFGQMNEPPGARARVALTGLTIAEY
FRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGGMQERITTTKKG
SITCVQAVYVPADDLTDPAPATTFAHLDATTTLSRGIAELGIYPAVDPLDSKSRMLDPRI
VGQEHYDVATSTQKLLQDYKGLQDIIAILGMDELSEADKLTVERARKVQRFMSQPFAVAE
VFTGIEGALVPLKKTVESFKSILAGEYDHLPENAFYMVGDIDSVVAKAEKLAAEMAEGN