Protein Info for mRNA_7228 in Rhodosporidium toruloides IFO0880

Name: 15596
Annotation: KOG1674 Cyclin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 353 PF00134: Cyclin_N" amino acids 87 to 183 (97 residues), 48.1 bits, see alignment E=1e-16 PF08613: Cyclin" amino acids 92 to 182 (91 residues), 41.5 bits, see alignment E=1.9e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (353 amino acids)

>mRNA_7228 KOG1674 Cyclin (Rhodosporidium toruloides IFO0880)
MDYASHSQSSTRRHPASLLPKFMHDPRLLELVRSPVTPEMITYIAERAVDVISCGPAPDE
PPSPPTTPVKTNFADIHRQPHPDVPSLEAFITILVHKSNVQVPTLLCTLVYLDRLRARLP
KVAHGMESTRHRVFLATLITAAKYLNDSSPKNKHWTRYAAIFPIAEVNLMERQLLFLLDF
DLRMDEAELLAHFYPFLPREPVASTSNLRVQSTIHIPTVVENVPVPCTPPRRVSRAAASL
ATPGSSRRGSMSRTPYEVSPAGSHSSASSASPITPMDELPRYPGISVVSADESPARRPSY
QYIEVNRPLAKPPSSFLRAAYESGKGYFTLGNIDKARRTQPTSSLYDGASISL