Protein Info for mRNA_7244 in Rhodosporidium toruloides IFO0880

Name: 15612
Annotation: HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 402 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 36 to 56 (21 residues), see Phobius details amino acids 68 to 89 (22 residues), see Phobius details amino acids 109 to 130 (22 residues), see Phobius details amino acids 224 to 247 (24 residues), see Phobius details amino acids 281 to 300 (20 residues), see Phobius details amino acids 312 to 335 (24 residues), see Phobius details amino acids 345 to 365 (21 residues), see Phobius details PF04193: PQ-loop" amino acids 34 to 89 (56 residues), 41.3 bits, see alignment 5.2e-15 amino acids 284 to 336 (53 residues), 36.7 bits, see alignment 1.4e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (402 amino acids)

>mRNA_7244 HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679 (Rhodosporidium toruloides IFO0880)
MLPLGGGVALALFHSRPTPSPSTCKAAFEHDTTGTVLSSLIIAGLLLSYAPQYIRIIRHK
NSEGFSPLFLLLGATSSASSLGNIVTLQWGQVACCQYLTKGQCAESVLGIAQVFTQWFCF
SLIFILYLVYYPLSSKYVRSVPIASSALPRRKPFLTSLVPDFMRTTTPSNLIRPSRSSAS
LTSDVSSADDETDDERAFNPSTFLLPGQLRRGEIILSSEYRQAVSLFLLTVLHFLLTFLT
TFILLLTLPKAETPHQGTPSPWDPVPGNGGGREHPSERAVRVWATTLGLVSVALGCAQYA
PQLVHTARRRLVGSLSIPMMMLQTPGSFVFVYTLAIRPGVNFTGWATYFVTGVLQGTLLV
LCLVFRRRQKREGVDDWGEPLPGREGEQRDQGRGGERERLLR