Protein Info for mRNA_7276 in Rhodosporidium toruloides IFO0880
Name: 15644
Annotation: K17806 PAM17, TIM23 mitochondrial import inner membrane translocase subunit TIM23
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 48% identical to PAM17_USTMA: Presequence translocated-associated motor subunit PAM17, mitochondrial (PAM17) from Ustilago maydis (strain 521 / FGSC 9021)
KEGG orthology group: None (inferred from 48% identity to uma:UM03330.1)Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (204 amino acids)
>mRNA_7276 K17806 PAM17, TIM23 mitochondrial import inner membrane translocase subunit TIM23 (Rhodosporidium toruloides IFO0880) MSVRTALAQTVRSSATRAPARRPLSHRLASSSAPPPPAPTAAEQHAARQLDWPTYLSLRK SQRVYGLVASIPTTLIGFSAGAGYFATIESDPGDLIFGIEPVYAYGLATLSCVGLGWLAG PTVGGALWRLTHRNVAKAMEAKDKDFFRHISRWRADPSRQSATNPAPDYYAEKVGSLRQY RSWLRDQNIFRRKAAFGSKDEAVL