Protein Info for mRNA_7279 in Rhodosporidium toruloides IFO0880

Name: 15647
Annotation: K13698 ABHD4 abhydrolase domain-containing protein 4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 270 PF12146: Hydrolase_4" amino acids 27 to 255 (229 residues), 77 bits, see alignment E=4.3e-25 PF05057: DUF676" amino acids 28 to 119 (92 residues), 22 bits, see alignment E=3.2e-08 PF00561: Abhydrolase_1" amino acids 30 to 252 (223 residues), 82.9 bits, see alignment E=9.4e-27 PF12697: Abhydrolase_6" amino acids 31 to 263 (233 residues), 79.5 bits, see alignment E=1.7e-25

Best Hits

KEGG orthology group: None (inferred from 37% identity to bch:Bcen2424_6602)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (270 amino acids)

>mRNA_7279 K13698 ABHD4 abhydrolase domain-containing protein 4 (Rhodosporidium toruloides IFO0880)
MSSAPDQNLRQLKSGLNLHVEVLNPDAQQTIIFVHGLGGSSTNFAAVVQAAGLADTYRVV
SFDFEGHGLSPLSSDGSTSVEGYVASVAEVLDSVGADKATVVGHSLGGLIATTFAAKHAS
RVDKLILLGPVKKMSPGGVDALTKRAETVRSGGMSAIVDAVSTAGCSAKTNSSRPLSKAA
VRASLLASQPEGYAQACLALAHANDPDYSAISAPTLIVAGSEDKTSPQATVNFLSGAIKG
AKVAKIEDIGHWHELEDVDAVASEIKNFVQ