Protein Info for mRNA_7289 in Rhodosporidium toruloides IFO0880

Name: 15657
Annotation: K12877 MAGOH protein mago nashi

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 147 transmembrane" amino acids 122 to 141 (20 residues), see Phobius details PF02792: Mago_nashi" amino acids 6 to 145 (140 residues), 217 bits, see alignment E=5.7e-69

Best Hits

Swiss-Prot: 60% identical to MGN_ARATH: Protein mago nashi homolog (MAGO) from Arabidopsis thaliana

KEGG orthology group: K12877, protein mago nashi (inferred from 66% identity to lbc:LACBIDRAFT_291269)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (147 amino acids)

>mRNA_7289 K12877 MAGOH protein mago nashi (Rhodosporidium toruloides IFO0880)
MSTDPFYMRYYSGHVGSYGHEFIEFEISGNRLRFALNTNYRNEGLLRREMYLSEATLKEF
QRIVAESEITKEDDSKWPQKSVIGKQEFECRMAPYHLAFQTAKIGSLVDVQNSDDPEGLR
VFYYLVQDLKIFVYSLISLHFHIKPTY