Protein Info for mRNA_7326 in Rhodosporidium toruloides IFO0880

Name: 15694
Annotation: K01969 E6.4.1.4B 3-methylcrotonyl-CoA carboxylase beta subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 575 signal peptide" amino acids 1 to 43 (43 residues), see Phobius details PF01039: Carboxyl_trans" amino acids 94 to 555 (462 residues), 438.9 bits, see alignment E=1.2e-135

Best Hits

KEGG orthology group: K01969, 3-methylcrotonyl-CoA carboxylase beta subunit [EC: 6.4.1.4] (inferred from 63% identity to cci:CC1G_14677)

Predicted SEED Role

"Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)" in subsystem HMG CoA Synthesis or Leucine Degradation and HMG-CoA Metabolism or Serine-glyoxylate cycle (EC 6.4.1.4)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 6.4.1.4

Use Curated BLAST to search for 6.4.1.4

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (575 amino acids)

>mRNA_7326 K01969 E6.4.1.4B 3-methylcrotonyl-CoA carboxylase beta subunit (Rhodosporidium toruloides IFO0880)
MLSRTTRLIQRTHSHAHRALSSTRSLSSPLAALAPSRPPVSASHAFPVLPTLVDPTSEEF
VERAEQMREKEDEVRAMWGRILQGGGEKAQSKAKKAGKLLVRERIDALLDPFSPFLELSS
LAGEGMYDGKVPAGGIVTGIGRVNGVECMIVANDATVKGGSYHPVTVKKHLRAQEIAQQN
KLPCIYIVESGGAALPYQKDVFPDRDHFGRIFYNMARMSAEGILQLAVVHGTSVAGGAYV
PAMADENIIVANQGSIFLAGPPLVKAALGEEVDSETLGGGAMHARESGVVDHLATSDEHA
IALARQAVAGFAASGRVGVSQLQQVEEVDEPVYDPNELRGITGTNLKKSWDMREVIARTV
DGSRFAEWKSEWGQTVVTGFAHIHGHQIGIIANNGVLLSPSALKATQFIQLCEQRGVPLL
FLVNITGFMVGTAAEKGGIAKNGAKLVRAVAATTCPKITVNVGGSYGAGNYGMAGRAYSP
HFLFAWPSSRVSVMGPDQLQSVMETVSSDTAKTQSLKAQIEKESEAVFGSARLWDDGVIL
PQDTRTVVGLALGVVTKAWKPEQRDKVGNFGVFRM