Protein Info for mRNA_7328 in Rhodosporidium toruloides IFO0880

Name: 15696
Annotation: KOG1339 Aspartyl protease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 427 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF00026: Asp" amino acids 88 to 414 (327 residues), 130.5 bits, see alignment E=4.9e-42

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (427 amino acids)

>mRNA_7328 KOG1339 Aspartyl protease (Rhodosporidium toruloides IFO0880)
MPALSALLPLALLPAAFAAPVQPSPQAVRLAGSSPSSNLPLEQLVKRDLTKLLSARQPAP
KTSSNKKRSNTVPITNVIANGLQRLQTFAGPLKVGTPAQQLPVLYDTGSSDLVLLSACLD
GCPNGYFKADASSSFVKTTDETAAAYAGGAVLYGNAAYETVQIGDITVKNQRFLAGTDGE
LTGTTNAAGVMGLAPIVNPYAGVGGDLNWLQAAVASGSLPSNEFSLYFGRTAGAVSELVL
GGVDAAHVEGEVVSMPNAPEGTFTWGANVAGTFVDGKEVDSTGMIAVVDSGTEVNYVPRA
VAASIYVQLNGTLQNTAQQAVMGAVYDVDYYTFPCNSSLPVGFSFAEASSTKPMYMKSQD
VAWYTYSRLPSKSKGTCEGAFVGVDINYPFTETPAALLGLPWLKSFTSVYSFGADGNSPS
VLFAPSK