Protein Info for mRNA_7347 in Rhodosporidium toruloides IFO0880

Name: 15715
Annotation: K09495 CCT3, TRIC5 T-complex protein 1 subunit gamma

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 542 TIGR02344: T-complex protein 1, gamma subunit" amino acids 6 to 524 (519 residues), 921 bits, see alignment E=9.4e-282 PF00118: Cpn60_TCP1" amino acids 31 to 523 (493 residues), 567.9 bits, see alignment E=9.6e-175

Best Hits

Swiss-Prot: 74% identical to TCPG_SCHPO: T-complex protein 1 subunit gamma (cct3) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: None (inferred from 78% identity to uma:UM06067.1)

Predicted SEED Role

"Heat shock protein 60 family chaperone GroEL / Thermosome subunit" in subsystem GroEL GroES or Staphylococcal pathogenicity islands SaPI or Thermosome, archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (542 amino acids)

>mRNA_7347 K09495 CCT3, TRIC5 T-complex protein 1 subunit gamma (Rhodosporidium toruloides IFO0880)
MQNQAIVVNVGPERQQGRKSQQQNIQAAKTVADVIRTCLGPRAMLKMILDPMGGILLTND
GNAILREIEVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEILAQAMPHLERNIHPVVI
ISAFKRALEEALTIIESISIPVDPSNEDEMLKLIKTSIGTKFVSRWSDMMCKLALKAVRT
VAKEENGNKTVDIKRYAKVEKVPGGEIEDSCVLDGVMLNKDVTHPNMRRRIENPRVVLLD
CPLEYKKGESQTAIEVAKEEDWNRILEIEEEQVKQMAEKIIEFKPDIVFTEKGISDLAQH
YLVKNNITAIRRVRKSDNNRIARATGATIVNRVDDLRESDVGTKCGLFHVEKLGDEYFTF
LTKCQDPKACTILLRGPSKDVLHEVDRNLADAMAVARNVVFDPRLAPGGGATEMAISVGL
AKKARAIEGVQGWPMRAVSDAMEVIPRTLVQNCGGNAIRTLTALRAKHAAGEHSFGVDGE
TGKVVDMKEYGLYESAAVKVQTLKTAIESACLLLRVDDIVSAKRPQGEGGPGPMPQQGGG
EE