Protein Info for mRNA_7372 in Rhodosporidium toruloides IFO0880

Name: 15740
Annotation: K03869 CUL3 cullin 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 873 PF00888: Cullin" amino acids 29 to 771 (743 residues), 652.6 bits, see alignment E=7.5e-200 PF10557: Cullin_Nedd8" amino acids 804 to 865 (62 residues), 99.2 bits, see alignment 1.1e-32

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (873 amino acids)

>mRNA_7372 K03869 CUL3 cullin 3 (Rhodosporidium toruloides IFO0880)
MAVRRPVVRVPRVKAPRKQTEPADSTLDRLKEAIQQIQQHNVSQLSFEEHYRYAYNLVLY
KKGHLLYNAVAELISAHLEKETRDKIVPTFPHSTTAIASTSGTQAGTGGAASENVAAAAA
GQLFLDRLRDVWDDHIACLSKLRDVLKYLDKVWTNPSSGVPAVYDLGLSLFFHHVVLFST
NPKPAPPANSRASTSAPTPRPTTDPSTVAHHLLNTLLNVIRIEREGEVVSRSAIRSAVGI
LSRLTDEGPVPLPVQASQGTGSGSPVISSGAAAARQRTVMGEGPPGAKESPYKTAFEQAF
LKQTEEFYARESARLLIECDCPSFLQRINRRLEEESTRAQSYLKASTEPLLMSLLDNVLI
EQHLASILEHPASGLSTLIQDSRIEDLKLLYTLFGRVGKGHPALQAGVSAWIVAIGKQIN
EGVSLAPEPETRAEDAKGKGKAADESEGAKKKPEAGGAINAKTKAALAWVQNVLDLKDKF
DTLLAKAFASDKAFEKSINDAFSVFVNENRKSPEYISLFIDDNLRKGLKGKTEAEVDEVL
NKSVALFRFLTEKDAFEKYYNQHLSKRLINQRSVSDDAERSMLAKFRVEAGHQFTKSAEG
MMKDVKVSEDTLEEYKRFQDRAVIKAPFDIEPIICGSNVWPFSAKDKTCTLPKVLQDGIK
SFETFYNQKHSGRKLTFMPDQGSVEVKTRFKARTHELNVSTYAMVVLALFEGLGDDEKLS
YVDIANSTNMLAPELKRTLQTLACAKYKVLTKHPKGRDVNETDSFSFNSAFTAPLAKIRI
QTVAAKVETDAERKETESKVDEARNTQCDACIVRVMKDRKQLQHMDLVNEVIRQLSHRFQ
PTPQMIKKSIERLIEKEYLERDDEDRKKLKYMA