Protein Info for mRNA_7373 in Rhodosporidium toruloides IFO0880

Name: 15741
Annotation: HMMPfam-FAD binding domain-PF01494,PRINTS-Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature-PR00420,SUPERFAMILY--SSF51905

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 658 transmembrane" amino acids 170 to 188 (19 residues), see Phobius details PF01494: FAD_binding_3" amino acids 207 to 555 (349 residues), 49.4 bits, see alignment E=4.3e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (658 amino acids)

>mRNA_7373 HMMPfam-FAD binding domain-PF01494,PRINTS-Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature-PR00420,SUPERFAMILY--SSF51905 (Rhodosporidium toruloides IFO0880)
MAGFWDRVIRRRSSTQTVASSSTSLGRKSSKSSESSRPLSTSSFFSLERVSTNNNKRNSF
QQPMVHTETTIEYEGDVSTANGLVLPILDATDESVAAAPSDPSSFMRTYDWPRAAQTRRS
VDRPVQQNGSTLDESPAPSAREWEEKALPARRRSSAAPFGEWEDDRRLKVMVVGSGFAGL
AAVSFAVHSLTARSLDGADTLAALQAIACARQGYSVTVVERGSGKSPHGDLLTLGSNCVR
LLARWGLFTDLWQKSARGGWWLLKDYKGNDLEGKDLRDFPATYGAPLMQGHRAQYLGVLG
IEARMLGVEFRTGTEVVEFNDSAKSPSIVTAKGETLFADCIVVADGVSSYARAYLAPELG
ESSTKLRSTESNTDTTDEGKMYSVHRGAMASDKLRANPLTSYFFDGCMRTFLGPDSHLKI
APLDNNQQVSFTYVSRSRYKASLSWRDRRPVAEVTERLKEEGWDPSVIEAVSAFRTCLNW
AVEEDPPAKRWCTDGGKIVLLGDAVHALSPMSFQGASQAIEDGASLAVCLALAGGTSEGV
PRALRTLEALRRPRVLEAQRRGTQQRKLWHGWYDNPSPANFDLLVAEAYDYDVEMHTLAS
FERVCQKVTDDKTFVVDPAHRKACMAKLGINGPAELASKAFMEDWSLAWERGGERPVR