Protein Info for mRNA_7381 in Rhodosporidium toruloides IFO0880

Name: 15749
Annotation: K03128 TAF2 transcription initiation factor TFIID subunit 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1904 transmembrane" amino acids 437 to 455 (19 residues), see Phobius details amino acids 1834 to 1842 (9 residues), see Phobius details PF00439: Bromodomain" amino acids 1244 to 1328 (85 residues), 58.8 bits, see alignment (E = 2.4e-20) amino acids 1611 to 1686 (76 residues), 45.6 bits, see alignment (E = 3.1e-16) amino acids 1718 to 1800 (83 residues), 49.6 bits, see alignment (E = 1.7e-17)

Best Hits

Predicted SEED Role

"Transcription initiation factor IID 150 kD subunit" in subsystem RNA polymerase II initiation factors

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1904 amino acids)

>mRNA_7381 K03128 TAF2 transcription initiation factor TFIID subunit 2 (Rhodosporidium toruloides IFO0880)
MGKGFAITNQKVSISIGLQGRIHGYTELTIVPTAADLRTVWLHARSLSILSCSLRLPTVV
PLAFSHLPPSIPALTQPENIHTYPEMKRQIWRAENEGEEGELGIAIPQGCIVRTSIGMGR
TPSTAPTPAKDGLLPRTDEFEPFTVAVEYEVTKPGIGLVVVGPDEANPSRFPHVFTSSIS
DIGARTWVPCSDSPRERCSWDLELVVPRVLASAPPDKRKRDGPAAVEDGANGTTAEEDEE
EDDEEDEEVDAEYPISVIASGELVEQVVHPDRSDRVIWHFVQVSPVSVQQVGWAVGPFVV
TEVRGTKKRADGEAREDDEDEDGAAVQDDGPAIHALCLPGRESEMEYSVGVIRQAMEFYT
ATFGSYPFVTYAVAFVDSLASASPTFHSAGLTILSSDILHPPSVIDQAYETRHLLAHALA
VQWSGVNLIPRTPSDSWLIIGIALHMTSHFVRHLWGNNEFRFRLKKDINRCVEQDIQFEP
ICVPARLTLPEPNQMQFIALKAPLVLHILDKHLRKSGTSLGLDKVFPKIFLDAISGELTS
QANSLSTTSFMRTCRKLCGGSSEALKIFFDQWVYGSGCPTFEVTANFNRKKMAVELNVTQ
RCYAYAWSQKAPWEAQGHLRPIPLFDGQMTIRIHEADGTPYEHVLTIQDSFKRHEVPFNT
KYKRVRRNTKRYQARQAAATAAALGDIEAQEDMGLIDLGFSLGMWEDEKERERWRVADWT
EEDDLVMSQATYEWIRIDADIEWICIVKFTQPDFMWISQLQRDRDVVAQLEAIHALSSIP
SPIVSSNMCKTVLVSNYFFRIRMEAALALISCATLEQQYLGLFHLFKTFQTWYCFEPDVE
TKDPFGFRCIPKTNDFSDFTLYFMKKALVTAISMIRDERGQTPPVIQQFLVDLLAYNDNL
GNKYSDAFYITSVMNALSHTLVNVVPRDLNGDTEQITEVDSNENLAPAVQEVERYLASDR
LVPSYHNAVTIAGIEFKLKLTLASLIPEDRMFFFNYTRDGNYPPLRIAAFDALLLLNPLQ
DVMALVRYLFSVMRDDSSRLVQRRLAESVLESLPVLVAIHDLAAPDPNADPAGDAKKERD
ELANVLKMLRKKPGRSMNYRTSLLQTLTSPDVDPEVRLCCLKICEATVRPEGEPIPKMRF
RLPPTPAPAPVPEAPPTPVQTLPKLKLGGPATPKVTIPPRIDEYTPVGGFDEFAQPYQPY
QEPIPPPPPPVIKPPKKPKDKVVKPPKPQASQASGMPLADVTACKSLLKKLLKDKKSFIF
RAPVDPVKAGALDYFDKIKNPMDIGTMSAKLSAGVYPDRYAFRDDFKLIISNAKLYNGAF
SPIGELANDLDMMFDKHWERVEVTLSRLEGGQPSYAAAPEITRLPKIPKHAIPPPPPPPL
DGYYASPAPAPPAPTPTISLKLKAPAPPPPPPPLPAAADANAPAPAATPAHSPPPPAQAQ
PQPQATPAPVLASPALPPLPSGPPSASPAATPAPPPVPKPTFKIKLGGASIKDATPKPPK
AASFSPEVSYSPASTTYPDSYDPALAGIGPPKQKKHRDVKPEKKKIKGPINYAEPPDLDF
DDADSTVPVNPTPVAFAVPQRPEVLDTPRPPYPTKWVDPEGPVDIAKARMVLSKIRSLRE
AFFFQYPVEPVGPLATYYDEIEQPMDLDTMSKKLDAGAYPNYSALFSDFDLIVANCQKFN
TPNTEPIWHVLLLDRAWRTEWEKANKLSYITKRSLGAFLKKLMEEGAALPFNVPIADLAV
QVPNYHDYIPKEDGRDLQMIKRKLETDQYNSIEALEADFDLMVRNCYRFNGMESQVSFSA
RELDGKFKAGIKRIKTDSLKQNKRAGSSGVGGSFAYVVLAYLQRRFTIIVLCPSLLHDLR
KQVLSSPLPSSAPSWALAIQRTLPFFSSSHFHRSTLSLFSSALC