Protein Info for mRNA_7383 in Rhodosporidium toruloides IFO0880

Name: 15751
Annotation: K19355 MAN mannan endo-1,4-beta-mannosidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 592 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (592 amino acids)

>mRNA_7383 K19355 MAN mannan endo-1,4-beta-mannosidase (Rhodosporidium toruloides IFO0880)
MRPPSLSSAFAVTLTLELSALASAAHAHGGSHHLPSHPQQHGSRGVFARDARVESVLVER
AAEWVDERAVEFEPPAGQEALRAVVGSWTAEDDLWVSEGRYADSEALAERDLTQDEQRDQ
INNKVAAADLANKLLINPKWIALNPKWKPTNGTSTAAKPSTVSPSPSTSASKTASASTTT
RSTAGATLVLPAPPASTCATPYYGVAGTSAVYGPGLGDFPMLPRPSTFVKRSGNKLVLDG
ETYRIVGPNIYWLGLDENVYPSPSYPSHGRIREAMAITVALGGNTIRSHTLGISTGNSYS
LWPSAWKTNNKAFDTIDYSIWAARNYGLRLIIPLTDNYAYYQGGKYDFIGWAGADTSDGS
QFYTNSAVIELFKGYIKVLLTHVNQYTGVALKDDPTILAWETGNELGGYMLGGGAPPAPW
TKSIATYIKSLAPNHLVADGSDGLTNYNGDLANTGVGVSKVDLVTDHFYPALQWLLEKDQ
GWMKSISKNFFVGENDWTGQGGSDLNTFYSTIESWDGSGSMMWSIFGHGTIDDYCCNYVN
HNDGYTLMYPNGNTQALRTQAWYLMQHWYRMRGLTPPAALPAVACPQPELLP