Protein Info for mRNA_7399 in Rhodosporidium toruloides IFO0880

Name: 15767
Annotation: K12859 TXNL4A, DIB1 U5 snRNP protein, DIM1 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 142 PF02966: DIM1" amino acids 4 to 136 (133 residues), 215 bits, see alignment E=2.7e-68 PF00085: Thioredoxin" amino acids 17 to 95 (79 residues), 24.2 bits, see alignment E=2.7e-09

Best Hits

Swiss-Prot: 78% identical to TXN4A_HUMAN: Thioredoxin-like protein 4A (TXNL4A) from Homo sapiens

KEGG orthology group: K12859, U5 snRNP protein, DIM1 family (inferred from 81% identity to ppl:POSPLDRAFT_89525)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (142 amino acids)

>mRNA_7399 K12859 TXNL4A, DIB1 U5 snRNP protein, DIM1 family (Rhodosporidium toruloides IFO0880)
MSMFLPKLESGWHVDQAILAEESRVVVIRFGHDWDPECMVHDETLFKIAEKVKNMAVIYT
VDITQVPDFNKMYELYDACTTMFFYRNKHIMIDLGTGNNNKINWSMASQDELIDIIETVY
RGASKGRGLVVSPRDYSTRLRY