Protein Info for mRNA_7429 in Rhodosporidium toruloides IFO0880

Name: 15797
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 649 transmembrane" amino acids 100 to 117 (18 residues), see Phobius details amino acids 129 to 149 (21 residues), see Phobius details amino acids 169 to 195 (27 residues), see Phobius details amino acids 201 to 221 (21 residues), see Phobius details amino acids 233 to 253 (21 residues), see Phobius details amino acids 259 to 278 (20 residues), see Phobius details amino acids 295 to 314 (20 residues), see Phobius details amino acids 321 to 343 (23 residues), see Phobius details amino acids 363 to 383 (21 residues), see Phobius details amino acids 403 to 421 (19 residues), see Phobius details amino acids 431 to 448 (18 residues), see Phobius details amino acids 500 to 514 (15 residues), see Phobius details amino acids 574 to 594 (21 residues), see Phobius details PF06609: TRI12" amino acids 94 to 517 (424 residues), 88.5 bits, see alignment E=7.5e-29 PF07690: MFS_1" amino acids 111 to 506 (396 residues), 159.7 bits, see alignment E=2e-50 PF00083: Sugar_tr" amino acids 138 to 278 (141 residues), 40.2 bits, see alignment E=4.3e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (649 amino acids)

>mRNA_7429 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MTVPTDRPPEGGPFKDLDEGGREGDRGPAGQSRDEIEERDGAVGDAASGKTAIEAAADMS
AGPGGTESAGKDEEDKEGDQLATHHKNGLQDQTNYMPVKQILVVFASMQLSVLLAFFDQT
ITATALPSISAYFNAGRASAFVTAAYLLTSTAMQPVWGRLSDIFGRKYTLMLCVLIFAIG
SLACALARTMVQLIIFRGMQGVGGAGLLTLVLIIVSDIVSLKERGKYQGVTEITIMVGNG
VGPLIGGVLVQNVSWRWCFWINLPCCAAAIAVIAYFLPLKAVKGSAKEKLKKIDYGGAVL
TVAATVLLILPLNWGGTSFPWVSGPVLGCLIASFFAFAIFFLWEWKVARIPIVPPFIFKN
QTVAAIFASTFLSGSTILCQLYYLPQYFQVVRGDSPTRSGVLIIPQLITTTVFVFLSGQL
VSRTGEYKPSIVVGYAIWAVGLGLLSTLDQHSSTARIVGYQLLNGAGQGQTLQTSMVAAQ
AAVERSEMSVVTSVRNFMRSLGGTVSLVVAATILNNNLNSKLTPLGYSHSTISAIVDDPV
GIWQSSSRDASVLYNLSSTQKAQIVEAYVVGFNTVFHVLTGLIGANFLIALLLVKRHSLQ
RKDEEALKQRGKEWIQHRKEKKRGAGGRNLDEAEKGEAEEAAKQDEEGR