Protein Info for mRNA_7431 in Rhodosporidium toruloides IFO0880

Name: 15799
Annotation: K12396 AP3D AP-3 complex subunit delta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 924 transmembrane" amino acids 47 to 68 (22 residues), see Phobius details PF01602: Adaptin_N" amino acids 22 to 636 (615 residues), 321.5 bits, see alignment E=9.9e-100

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (924 amino acids)

>mRNA_7431 K12396 AP3D AP-3 complex subunit delta (Rhodosporidium toruloides IFO0880)
MLEQSIQGLIKALRANKNDEARVVEQALEETRKEIQSSDIDLKSAAILKLIYLEMLGYSI
SFASFAIVECMTSTKFHIKSIGYLAASQCFDRETEVAVLVVNLVKKDLLTPPTPLFSASP
NALTVAHLTTALSSVSLLLTPTLARDLGPDLLSLLTHTRPLVRRQAVLTMWRILRSWPGV
QELTTGREERGEDPWIERIRERLSDEDMGVVGATVNVICEAARKDPRKYLPLAPELFRLL
TASTNNWMLIKIIKLFAVLTPEEPRLVKKLVPPLTELIETTPAMSLLYECIQTSIVGGML
NGPEGEVLARTCVEKLGAFLEDIDQNLRYIALVALVKIAPTHPHLISTHYDTILGCIDDA
DMSIRMRALDLVEVMVNRQNLQTIVRRLLTHLRPSASTASGAASLLRAQQAATTGAPATP
STPAISTAYRSSLISLILRMTSSGTYSNVSNFAWLIDTLVELAYISQTLQPDLAAPASTA
ESPPTVGSQLRDQLIDVTARVRQIRPYAARKMATLIQDEDLLGTGESGDATEVLGAAAWI
CGEYCRDLDDPRPVIASLFGSSTTSSLPPRVLALYVHNGVKIYASWLSALAEAWDESSID
QIRSITTALENQLAECAKSQDVELQERAAELHGLLQLVRTGLDAPRPVVDSAAAEEGPSE
DAGGFASSSRTPPSSLNLLDPLFFSHELNPVNPKAQSLVTVPDGLDLDVAINAGAWAAED
GASADEREVEIDEFGRPLRMAVVASDEVERGGKKKKGKGVSGKKGKRRDVEEDPEELSQL
RAERYERERDDPYHMGRSSSYRSGSEDDVDSIPIVNLDIDLRSPPARTPTPPPREPTPPP
MEVDIEGELPPGLAAPLAPRPTSTRSVSPVEPAQGEKVESAAEVKESRAEEGAAVKVVKK
KKGKAGDGKSTKTKKSKTAVALDE