Protein Info for mRNA_7434 in Rhodosporidium toruloides IFO0880

Name: 15802
Annotation: HMMPfam-Outer membrane protein TOM13-PF08219

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 896 transmembrane" amino acids 801 to 823 (23 residues), see Phobius details PF08219: TOM13" amino acids 799 to 838 (40 residues), 46.1 bits, see alignment (E = 2e-16)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (896 amino acids)

>mRNA_7434 HMMPfam-Outer membrane protein TOM13-PF08219 (Rhodosporidium toruloides IFO0880)
MASDSLEPPLPSPSAFPSLSPDAPSHTAPVQPSISYAKASKSVLPPTKAPEGISLPPPPH
SDAPVTGEAGATSGSAHERRPHSSKERLQPSQNGKHSPYARPNPAGAGKGVKKGPGAGAK
GGKGPAGKAKPAAGANGPATEEANGAKQPRTHVPGMPASMLPVAKKSGSSHGRKSSTSSP
AANGSAAPTATGDAPAIGKKRRQSLRKVLPPTSSKLSALAPTFEFAPRAPTSSSTAVDSS
SSGHSSETEGDSQSRPKDETDLISTSEKAAINETVSSAGAQGDAFVAKSFSQADAEGADV
VAGTSASEQSAKPSDAKAAALKTASTDFEGQEKEEIPAEPAQERSFGALLSSAFVNTDGT
AFAPLSDLEEAKPAPPAVEQVKTERISGAVQESPVADISWREKQGWWNDDFDASIASTSS
STPAEEPKPEEAGPAAVEPARSQDPASETLLRFPPWTPEPPSTPEATQRVRDVADVRSAT
PLGTFLNSAFVADDPKDASDVPTSVEEIVASSAASPPPSISMPAPTPLSSFLSSSFSNPT
TPSALESFEPQAELAAERLAKIDALPPSKRPEIDFPISAEEVAAQPSLDDVLDVDGIEDG
KVVVEDEEKKPKEEKYGWWSPDYDPSRPSASGSKDLVDEQKVKETVQSAGAQGDEFRGKT
FEQADMEGEVESAPVEPAKQSAGVTKEEKAQVGKAEEEERDGSRTPLGEYLGQAFSSAPS
TSSTSAPAPTASTSAASTTTPAQVACEDSSTPTATAPALSRRRSSSPPPPPGNSNNADDA
PSLTLALASAWHTAPWTRKIWAVLASLAINVGLPFVNGVMLGFGELFARNVLGVRLGWPL
ASSSSNSNTSTRANTSSVGLRAAGRTNPNIGHEVPGHAGAKTVAEAAGEAVREAAE