Protein Info for mRNA_7474 in Rhodosporidium toruloides IFO0880

Name: 15842
Annotation: HMMPfam-Glycosyl transferases group 1-PF00534,HMMPfam-Starch synthase catalytic domain-PF08323,SUPERFAMILY--SSF53756

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 935 transmembrane" amino acids 104 to 122 (19 residues), see Phobius details PF08323: Glyco_transf_5" amino acids 158 to 488 (331 residues), 42.3 bits, see alignment E=7.6e-15 PF00534: Glycos_transf_1" amino acids 580 to 703 (124 residues), 26.7 bits, see alignment E=3.8e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (935 amino acids)

>mRNA_7474 HMMPfam-Glycosyl transferases group 1-PF00534,HMMPfam-Starch synthase catalytic domain-PF08323,SUPERFAMILY--SSF53756 (Rhodosporidium toruloides IFO0880)
MYHLAHAQPRPCCPLASPTSSSRRPFAGLAMAHARSTSISTHSPLHSPSHTLSYRLSPRN
RTRSTLSIQFQNGLSKEKDGRRERRAGRGGRAGERIWGFVRRRWAVVVLLALAVVVVLYL
LLRTPERPPLIIPKRPYTLQEYRHLDQSLPISLRPATRILHVTKEFGPATMGGLGVMLTA
LSIAQSDSPLLAIAVALPHYSYLHERYSADEIRPFANLTIPITTHPSSSSRPAKHIRVPV
SLLRWSYTPSPDFLHVPSPANEPISDPPSRTIDIYLLGPSDSRPFSAAFRAKDEGDIYSA
YKPLKQEWKDLYFARAAAELVAYLGAKDEATVFEDDDLALDEEEPTPGLSAKRRVDVVHL
HGATNAFVAHFLREREKEERHVQRLQGRHPAIVYTLHDSLDEVEYSNLVENVVHFLPPAP
APTRSNDADDPRTASHPLARLQPYIYRSGTQLFTSALGIDLADRTTFVSRSIAADIVSGR
FRFHLQDLVMPSIARRAAKGEFVGVTNGLDFTERERNPFTSPKLVERGLAFPRVRGGDLF
DPSTFPSSADDPSFVSSKRRARAFLVSHLPQHFSPTDLSQPWFVFIGRYQYNKGCQFFST
LLEEIARSPGGGRLVLLGARNNYPFSLLTNLARTYPSHLTLIDDRSPSTSSFQRDYGTLI
RLASDFAFVPSLSEAFGLVAAEALLFGMKVVSTGVGGLGEFLVPIREGEEEGRGNSYLFD
LFPDRSKEEDVPPTQGAEEEYSRSAQDVRPDEEMLQPAREKLRKAVRRAVRDWERERERS
VEEREREVRRLVGSALELRWDREGGPVDEYIRVYDRALNTRRRRLGLPRSIPSPSPLAPE
QPAPTSHEQPHRLPSRLEGVVEMIRRRGRKARGRGLSLPIFKVWDESTAVRASRPKPKAK
TKGRGRGKGKGGGKAGMRVRVAGEARAAGRARGNG