Protein Info for mRNA_7490 in Rhodosporidium toruloides IFO0880

Name: 15858
Annotation: K20167 TBC1D14 TBC1 domain family member 14

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 595 transmembrane" amino acids 386 to 410 (25 residues), see Phobius details amino acids 456 to 475 (20 residues), see Phobius details amino acids 482 to 502 (21 residues), see Phobius details PF00566: RabGAP-TBC" amino acids 298 to 506 (209 residues), 120.7 bits, see alignment E=3.8e-39

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (595 amino acids)

>mRNA_7490 K20167 TBC1D14 TBC1 domain family member 14 (Rhodosporidium toruloides IFO0880)
MSGDATLDDTTAGLHEVALDEAPPIRSRATPRADSPTPLDGHVGDADGRAGGIGIDADAT
EAGQAAEGADADASIRADATRTDEGMNSDGGFEAVSLGDEQAEDHSPTIQENGDDPHRSS
TPPSPASPAHTPPSTPPPHSPSVVSTAPTTTIDPSSSHNVSTPPETAETDAKGAGEAEAK
VVTPAATPQKKPVSTRKQTVMQKVVSMTRQRTLPPKSKEEEEKHLEQLAEMLAASREAEK
RRRSEAEARSALRATALATAFPVWEKSILPNWRVVLHDDAQGRRLRDLWWDGTMPVRWRG
RLWAMCIGNGLAVGKNELSKASERVRALREAGKFEEVERAAKEDVERVLPALKLFQEGRV
MHEDLMEVLLAWSVHEKVTPRYVPGLAFPAALLILNMSPSEAFVCLVNLVQKSFLRSFYS
GDPDEVEAYYRVFDTLLADYMPRVYANFSAQVVRPSLYLFPWLSTLYTAFLPLDLATRIF
DVFLLEGDSFVFRVAIVILQILEPRLFNPNLDELSAVFEGTDKGAVGVVRREKGLLTADG
GSIEERDGGIRVEVEDVYSEMGATEDRVFKLLRQLDWKEETFARLVERELPEVGV