Protein Info for mRNA_7495 in Rhodosporidium toruloides IFO0880

Name: 15863
Annotation: K10089 M6PR cation-dependent mannose-6-phosphate receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 168 to 192 (25 residues), see Phobius details PF00878: CIMR" amino acids 20 to 116 (97 residues), 22.5 bits, see alignment E=1e-08 PF13015: PRKCSH_1" amino acids 87 to 163 (77 residues), 22.9 bits, see alignment E=6.1e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (342 amino acids)

>mRNA_7495 K10089 M6PR cation-dependent mannose-6-phosphate receptor (Rhodosporidium toruloides IFO0880)
MRSLSLACALAVAATGALAASSTPCVLQGASIGKFDLRGLRNKKQDYVATNPDGGAISLN
FCGAVSDQASPAEAAQGYGAYIEDTRGGISLGEYSTTPAYHNGQLSLTYKNGAACPNSNA
RRSSLIYLQCDQSWTSGNKLNLIDSVDDCVYFFTMKTPYACSRSGGFFSAIWGAIVFLFW
IGVVVGGAFFVYTRFFAKRGGQTLGGSSGGGAGEAVSFVKDMVIIGGVWLIDAAQNVFNA
VRSRRSRASTDYNYNYQPAPASPQHRQQSSGQPDYSSSAWQAPARSGPNPPAPPAKSPPP
QAHNPLAGGGSLLEDDEDDEDEEAKLAMPGTRGANGRNGDLV