Protein Info for mRNA_7502 in Rhodosporidium toruloides IFO0880

Name: 15870
Annotation: K19788 OLA1 obg-like ATPase 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 395 TIGR00092: GTP-binding protein YchF" amino acids 20 to 393 (374 residues), 441.6 bits, see alignment E=1.2e-136 PF01926: MMR_HSR1" amino acids 23 to 140 (118 residues), 64.2 bits, see alignment E=1.8e-21 PF02421: FeoB_N" amino acids 23 to 70 (48 residues), 29.3 bits, see alignment 9.1e-11 PF06071: YchF-GTPase_C" amino acids 311 to 393 (83 residues), 115.2 bits, see alignment E=1.9e-37

Best Hits

Swiss-Prot: 61% identical to OLA1_SCHPO: Obg-like ATPase 1 (SPAC27E2.03c) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K06942, (no description) (inferred from 72% identity to cne:CNC04930)

Predicted SEED Role

"GTP-binding and nucleic acid-binding protein YchF" in subsystem Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (395 amino acids)

>mRNA_7502 K19788 OLA1 obg-like ATPase 1 (Rhodosporidium toruloides IFO0880)
MAPKKAVVEKKAMLGRPSNNLAVGVVGMPNVGKSSLFNIMSRCDLGKVANFPYATIEPEE
ARVSVPDERFDWLCDLYKPASKVPAFLTCVDIAGLTKGASTGAGLGNNFLANVRAVDGIF
QVIRAFDDADVIHVEGDVDPIRDMEIISQELRLKDAEWVEKKQDALKKSLRGATGTANLR
DKAMKEELDTVTKVLELLQSGRDVRKGTWSNKEIDVINDLLLLTAKPVTYLVNLSERDYI
RKKNKWLPKIKAWIDENAPGDILIPFSVALEERLAIEFADDEAGLKAELEKLGTQSQIGK
IMKVGYQSLSLIHYFTCGPDEVRAWTIRKDTPAPKAAGVIHTDFEKTFVCGEIMSYDDLK
ELGSESAVKAAGKQQQKGKTHLVSDGEICYWKCGA