Protein Info for mRNA_7505 in Rhodosporidium toruloides IFO0880

Name: 15873
Annotation: KOG3292 Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 206 transmembrane" amino acids 24 to 47 (24 residues), see Phobius details amino acids 73 to 105 (33 residues), see Phobius details amino acids 120 to 137 (18 residues), see Phobius details amino acids 150 to 171 (22 residues), see Phobius details PF06127: DUF962" amino acids 8 to 167 (160 residues), 84.5 bits, see alignment E=2.3e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (206 amino acids)

>mRNA_7505 KOG3292 Predicted membrane protein (Rhodosporidium toruloides IFO0880)
MARSRLFDLKEQFVFYASYHTNLTNVLIHVACVPTILFTALVLTHGIPGASKSFATLPLD
ILGHHFDLDLTFPFLWVAGNAAYFILLEPVAGLLYAPILLTMGHLSNVLYSTHHDEAMKL
AGYAFVGSWIAQFVGHGKFEGRAPALLDSLLQSLVLAVFFVWLEVLFFLGYRPALYKDLQ
RRTGVAVAEYRKQRAQQERVNGKKKA