Protein Info for mRNA_7513 in Rhodosporidium toruloides IFO0880

Name: 15881
Annotation: KOG3267 Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 146 TIGR00149: secondary thiamine-phosphate synthase enzyme" amino acids 19 to 144 (126 residues), 134.1 bits, see alignment E=1.2e-43 PF01894: UPF0047" amino acids 28 to 144 (117 residues), 127.8 bits, see alignment E=1.1e-41

Best Hits

Swiss-Prot: 54% identical to YE72_SCHPO: UPF0047 protein C4A8.02c (SPAC4A8.02c) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: None (inferred from 66% identity to cci:CC1G_06786)

Predicted SEED Role

"FIG004064: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (146 amino acids)

>mRNA_7513 KOG3267 Uncharacterized conserved protein (Rhodosporidium toruloides IFO0880)
MSSSSTSDGGRFQTVIKLQSRPKGCHLITDEIVAALGDKLKNTKIGILHLFIQHTSAALT
INENCDPDVRTDMDRVLDKIVPESFDWDHVDEGPDDSVSHTKASIIGPSIQIPIGNGRLM
TGTWQGIYLTEFRHHPHARRVVATIL