Protein Info for mRNA_7514 in Rhodosporidium toruloides IFO0880

Name: 15882
Annotation: K11757 PBRM1, PB1 protein polybromo-1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 689 PF00439: Bromodomain" amino acids 94 to 167 (74 residues), 57.8 bits, see alignment E=4.9e-20 amino acids 255 to 326 (72 residues), 58.8 bits, see alignment E=2.3e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (689 amino acids)

>mRNA_7514 K11757 PBRM1, PB1 protein polybromo-1 (Rhodosporidium toruloides IFO0880)
MSDAGASTPTPGSSGAATARQKRVRGAVDLNNIVDGERTRRRTSNALDFRSGRSGSPNPA
NVPATDPEGFKRVQEQGIELYDRMMAQKDPHDSSRPLYYAFAELPSPQDYPDYYRMIKKP
ISYAEIKEKLDQMGYTCLSEVRNDFNQMYVNAKRYNAPGSPLFLDAKRQHKLLKDTYAVM
TGEDKDDEETGRAGSVGPNSDPTYGEGSSRRSGRKREDGGGGGGGGGDKQKGIAMKTWLL
KKLDETMAPVDMNGRPYADNFMTLPDRDAWPHYYQVIPRPVSFEVVRSRLNKRSYHGVQH
FVDDVNMIFSNAMFYNEEGSRIWKDALFLQQHFAEVMSEQPPSFTLLRKRQVDQDIPTTT
PQPPQPPARRRRQSSAIPTTTMSPEAGNEQAYEPDEDEEMDDDESRQGSVAPVGIVDPLR
PKVEDIPLADPYALPGIPVNALSAPAYPPQASPTLPTGLPALPSFDATANSLMGLASSSS
GIFGAHDVAMASPASYGANGHPSPAASNGTLAPVSRLVARAPLAGEVPLVSRFEVTLVTS
SPSKQSIRKTVILDNSSVRQHSLSVPFSTERVELAPVFRRSPGAPASPTSKGKGKAVENG
LGLDANGYEPTPQVTVTARPSGATISPVADLPPAPGAGDLSVHSPASSATRYALVPRKGL
NVVEVVARPAVAIAGEEGGEEVYRLFVTK