Protein Info for mRNA_7518 in Rhodosporidium toruloides IFO0880

Name: 15886
Annotation: KOG2641 Predicted seven transmembrane receptor - rhodopsin family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 608 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 138 to 162 (25 residues), see Phobius details amino acids 174 to 194 (21 residues), see Phobius details amino acids 200 to 223 (24 residues), see Phobius details amino acids 262 to 283 (22 residues), see Phobius details amino acids 298 to 325 (28 residues), see Phobius details amino acids 338 to 359 (22 residues), see Phobius details amino acids 379 to 400 (22 residues), see Phobius details PF03619: Solute_trans_a" amino acids 140 to 405 (266 residues), 268.3 bits, see alignment E=4e-84

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (608 amino acids)

>mRNA_7518 KOG2641 Predicted seven transmembrane receptor - rhodopsin family (Rhodosporidium toruloides IFO0880)
MRQILLRSPRRSPALSSLSFAFYAAASGSEASGESGDVQPAQPVSASSSRTPPRRPAPPD
PTSSELLRSDVPLSCLCDRPRRPHRVPFRTSQPPAQHLLSPERSTTMSSYFNSTCPVENT
AAIDQSSFWDGRWDAHEIGWLIAGVTAAVSTVITFYNVWLHARNYYKPKEQRQVIRILFM
PAVYAVVSFFSYRYFRAYTYYSVSVVAYESLVLAAFLMLLLQYIGQSTEEQKAILRDKEK
RKIPIPFCCIRFRPSKPYFLHALKWSVLQYSLLRPTISIISIITEAFDKLCPNQYSVYFA
AVYLDAIDFVSISVALYGLIVFYALVKERLAGKRPLAKFLSIKIVVMLLFYQSFVFSILQ
SHGVIKGTEYWTSTNVADGLAALCVCCEMVIMSLVFGWAFTYKEYAPLRPEGAPHTSVFR
SLVHSFNYYDFLVEGGRGIAFAWAFILRKPGTHAGKNTRAKLITAVHDSPNAQYGFDVGA
AFAGVERDEVMPFGMAGKGAPMGMGEKAEVAESHVPLSPRVGQEQYVMSTYETRGEVMDE
REPAVVPPTSFGRLPATDDQPYASSHPYAGERSAENRADRQGPAVAGRDFVAHEMPLPGS
PPEPHERQ