Protein Info for mRNA_7519 in Rhodosporidium toruloides IFO0880

Name: 15887
Annotation: HMMPfam-Protoglobin-PF11563

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 227 PF11563: Protoglobin" amino acids 22 to 211 (190 residues), 110.9 bits, see alignment E=2.9e-36

Best Hits

KEGG orthology group: None (inferred from 36% identity to scm:SCHCODRAFT_49225)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (227 amino acids)

>mRNA_7519 HMMPfam-Protoglobin-PF11563 (Rhodosporidium toruloides IFO0880)
MSATASCPFKHYDRDLIRDDLEQRVTFSRDFLRFDEESGKTLNSVASVVAPLVKPVVDQV
YVQLFRFDYTASFFLKRNVGFEGEHATTLDKLTLDDPQIAFRKNFLVNWVTKCFTSDFEK
FATWEYFDKVARMHTGQAAFKHRANKAPLVVDLQPAALLFGWVIDVVIKAVMALDNEVAD
LQKKQEIICAFNKLIWCQNDLWVKYYAKSDEELAAATNKAKAEDPSA