Protein Info for mRNA_7520 in Rhodosporidium toruloides IFO0880

Name: 15888
Annotation: K18725 POM152 nucleoporin POM152

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1331 transmembrane" amino acids 30 to 48 (19 residues), see Phobius details amino acids 68 to 87 (20 residues), see Phobius details amino acids 99 to 124 (26 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1331 amino acids)

>mRNA_7520 K18725 POM152 nucleoporin POM152 (Rhodosporidium toruloides IFO0880)
MAADPQAQERPPPPQPRIPNYLLDAPQQRLFVTSLLALLTAYKLADALLPQSDAPPIIAD
ELPLNWLLWKWVAVDLVFVTAVAWLRVPRLDWGWKARWMLRAVLVGLDYALFGRWTFTAS
VFMPALVKGLLTRSLSTDEHSVRLAAVVGNDKAHLGGQYTVHILAVSTAMLNPLSTIYCR
HPSRSSKADPTLVPLVLNNTVPSKVTYTLTSFDDPPTSHQYTVSASSLVRHSHPSQHHRG
GESTTQSKEDDELALAAEWSLVPSSQRSSSQALRHRLPSDSSPSRPSASDPFGLSSTEML
YYIPISSTGSIRLDSVLDKDGHTVKIRRKRATSPPPSAGSKPDAGTVALAFEETRIVRCP
SAGLSLAPTALGYQGQEEEHRCLVPNQGVAESWPLGLVVSGSEPLSVKWHSREGDAEKGF
RRDEALEGIVHAGSANEVVPVPVNVSLSRPGRTTFYLDSVKDGYGNEISYIDVGKSRHLL
IDETIPSRSVVVHRPPEVAFIGECAKGEDVHLLKGGKKRLQMRLSGIDEELAEARSAGAE
GPRFKVQVKFTPEEAGKEGWTRMITTGGARAEVEVDSAGTCEILSVKSKYCGGAVLVPNA
CTVVVQPTPTLSTSFAPLHDVCNSETGVLANLHLTGAPPFTVHYTITRLSGPGSPRSTRH
TRRVLHSRDELRLEPGPGEWEYRFVKVDDAFYKDLPLPPQASYAKRQKIPVVGDAKWKNA
DKGKTVHSCEGETVQVEVELVGQAPWDIEYSVVGQPAQAITGITESPHVIDIDIPKGIAQ
QGGQFALSLESVRDGNGCRRPLTVSDLVVEVRRTKPTARFHGAEGSRSVLIRDDDTAKIP
LRLTGEGPWTITYQPPSISGRTVDPVSFIAHQANAEINIRSAVPGTYRLLSVRDKYCPGD
VSEPEWTVQTLPRPKLRLDESVGKVIRNGSIVRRGVCANAVDSVPVLFEGKAPFKAFYTL
QKGSHHGETRQHSLQAIQSRADLTLYSATPGHHSYTFTGVGDALYTEPNSAGLEAPAGGK
AGVVRLEQDVFDLPRASFAHGAKQGFCVNDELASRGSDDLVVNLIGQAPFELELEVREDG
HRNSKRYTVPSIHSNSWAVSLPYGLHKAQPHSIFLRRVKDANGCETLIDPSVPAPSGKRT
SVSIPVAEIATITPVSAQEDHCVGDFLDFVVQGSPPFTVKYEFDNKQHSVPLTSGKFQRV
AASPGIFKIVSVGHGEDQCRSNQVDIVKRIHPIPSARVHTGDSYVVDIREGEQTEIVFSF
TGTPPFSFTYSRRAAQDRSKDRTVLETHTVTGIEDNQYSIYTSQEGTWSVSFIQDKYCAY
PPSRGSAVVKA