Protein Info for mRNA_7520 in Rhodosporidium toruloides IFO0880
Name: 15888
Annotation: K18725 POM152 nucleoporin POM152
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (1331 amino acids)
>mRNA_7520 K18725 POM152 nucleoporin POM152 (Rhodosporidium toruloides IFO0880) MAADPQAQERPPPPQPRIPNYLLDAPQQRLFVTSLLALLTAYKLADALLPQSDAPPIIAD ELPLNWLLWKWVAVDLVFVTAVAWLRVPRLDWGWKARWMLRAVLVGLDYALFGRWTFTAS VFMPALVKGLLTRSLSTDEHSVRLAAVVGNDKAHLGGQYTVHILAVSTAMLNPLSTIYCR HPSRSSKADPTLVPLVLNNTVPSKVTYTLTSFDDPPTSHQYTVSASSLVRHSHPSQHHRG GESTTQSKEDDELALAAEWSLVPSSQRSSSQALRHRLPSDSSPSRPSASDPFGLSSTEML YYIPISSTGSIRLDSVLDKDGHTVKIRRKRATSPPPSAGSKPDAGTVALAFEETRIVRCP SAGLSLAPTALGYQGQEEEHRCLVPNQGVAESWPLGLVVSGSEPLSVKWHSREGDAEKGF RRDEALEGIVHAGSANEVVPVPVNVSLSRPGRTTFYLDSVKDGYGNEISYIDVGKSRHLL IDETIPSRSVVVHRPPEVAFIGECAKGEDVHLLKGGKKRLQMRLSGIDEELAEARSAGAE GPRFKVQVKFTPEEAGKEGWTRMITTGGARAEVEVDSAGTCEILSVKSKYCGGAVLVPNA CTVVVQPTPTLSTSFAPLHDVCNSETGVLANLHLTGAPPFTVHYTITRLSGPGSPRSTRH TRRVLHSRDELRLEPGPGEWEYRFVKVDDAFYKDLPLPPQASYAKRQKIPVVGDAKWKNA DKGKTVHSCEGETVQVEVELVGQAPWDIEYSVVGQPAQAITGITESPHVIDIDIPKGIAQ QGGQFALSLESVRDGNGCRRPLTVSDLVVEVRRTKPTARFHGAEGSRSVLIRDDDTAKIP LRLTGEGPWTITYQPPSISGRTVDPVSFIAHQANAEINIRSAVPGTYRLLSVRDKYCPGD VSEPEWTVQTLPRPKLRLDESVGKVIRNGSIVRRGVCANAVDSVPVLFEGKAPFKAFYTL QKGSHHGETRQHSLQAIQSRADLTLYSATPGHHSYTFTGVGDALYTEPNSAGLEAPAGGK AGVVRLEQDVFDLPRASFAHGAKQGFCVNDELASRGSDDLVVNLIGQAPFELELEVREDG HRNSKRYTVPSIHSNSWAVSLPYGLHKAQPHSIFLRRVKDANGCETLIDPSVPAPSGKRT SVSIPVAEIATITPVSAQEDHCVGDFLDFVVQGSPPFTVKYEFDNKQHSVPLTSGKFQRV AASPGIFKIVSVGHGEDQCRSNQVDIVKRIHPIPSARVHTGDSYVVDIREGEQTEIVFSF TGTPPFSFTYSRRAAQDRSKDRTVLETHTVTGIEDNQYSIYTSQEGTWSVSFIQDKYCAY PPSRGSAVVKA