Protein Info for mRNA_7551 in Rhodosporidium toruloides IFO0880

Name: 15919
Annotation: KOG1032 Uncharacterized conserved protein, contains GRAM domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1080 transmembrane" amino acids 925 to 944 (20 residues), see Phobius details PF02893: GRAM" amino acids 457 to 565 (109 residues), 81.8 bits, see alignment E=3.6e-27 PF16016: VASt" amino acids 688 to 834 (147 residues), 144.6 bits, see alignment E=3.4e-46

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1080 amino acids)

>mRNA_7551 KOG1032 Uncharacterized conserved protein, contains GRAM domain (Rhodosporidium toruloides IFO0880)
MLSRLKRRAPSTSLADPPLDDPPSPPSASDTASHNDTTLSSPSPAGKTTQRSFTTPVKGQ
ADRDSGRTLSPARAYGTGAVGAGRASRSSSFGSYQGEQRTTNLSSPGELGNSGGRVDDIG
HGSLTLDHLALPDGSSAPLTLVVQAPELLARAEQPASDGDAYTPTGEGPDQRTPLAAPTT
LFPPALTGATSSAGSALGPVVAHNRPRSHTTSEAPPPGYTTRANGLDALAKINNSTLSPH
SESPTKQLRASSPPSSSRPQSRAASRPLSRSSSINSQQQPDNLSLRPPGSVSPARGRKGT
VSKNGIAGALALSGVALASPSQSLRHPNVLAPLAAAGNGGSAPVSPGTAPSSTEETPANL
ADAPASARDSLETHTSPAASVIDHGHSSPSEALVGVPLATTYSHDQPSMYDGALGVGSTL
GDHLSGFLSMDQLGDFDDVVSMLGTGYAVASSKRNADFHALFKHIPEDDYLIEDYGCALQ
REILIQGRLYISEHHLSFYANIFGWVTSLTIPFSEVCSIEKRMTAYVIPNAIQIATMHAR
HTFASFLSRDTTYDLIGNIWRMFHPVVPMSAALPDTLSTSGNSHAAGESEDEEAAAAQDA
QTSPAAEGKKERAKKRLKGFRRPRGGTGESTGSTNKSVDFALPVDDAAESKGEGEAGEGK
KKGKKGAAPAHPPTVDTCPTLKNLKEVCMDTTFPGAPEKIYNLMFTSGFMKDFWAENQKL
TEIQIGDWAPQASGSNLLARSMSYIKPLNGSIGPKSTKCLITDESVHVDFDDYVCVVTTT
RTPDVPSGSAFAVKTRTSMTWAKNNHCRVVVTTGVEWSKSSFIKGIIEKSAIDGQKQYHT
DLEKAMRAYIHSHRNEFVEEGQDPDGASSASEDEGGSIEGSVSAMDMAAQAQAEDAAAKA
APNGVLGTIWCTLEPLFETLANQSAASLALGAVVVVLVLSNLWTLRSAGGAREGDLHPAE
RVRRRNAAGLTGGAEQVPAGAGAGGDRTPQEVAMAVRDVLQDYFAVQHGIGLPATAREPQ
AATTSAESVKAGKGKVKVEEEVRDIELVLDRLEERIGRLRRELRETRAQEEKSEALGDLD