Protein Info for mRNA_7559 in Rhodosporidium toruloides IFO0880

Name: 15927
Annotation: HMMPfam-PLAC8 family-PF04749,TIGRFAM-A_thal_Cys_rich uncharacterized Cys-rich domain-TIGR01571

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 215 TIGR01571: uncharacterized Cys-rich domain" amino acids 66 to 178 (113 residues), 70.8 bits, see alignment E=7.4e-24 PF04749: PLAC8" amino acids 68 to 176 (109 residues), 74.9 bits, see alignment E=4.6e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (215 amino acids)

>mRNA_7559 HMMPfam-PLAC8 family-PF04749,TIGRFAM-A_thal_Cys_rich uncharacterized Cys-rich domain-TIGR01571 (Rhodosporidium toruloides IFO0880)
MVDKKQHGYQQLSQAEHDAPPTYDDAVSLVARTGGMVVSQPLATPQMSIAGARNPKGQPV
GFDGQRDWNHGLCDCLERPGLTVGACCCPCMVYNHNRTRLTHLYQSGQPAPSPSYCGLSC
LLYALAPQVAGIGQMALQCMARFQTRNRYALRGNAVEDVLVGAFCAPCSLVQESREIEDE
EQALRAGVLGADVPPPAVEGAYRDEVGDEERAVGN