Protein Info for mRNA_7571 in Rhodosporidium toruloides IFO0880

Name: 15939
Annotation: K11450 KDM1A, AOF2, LSD1 lysine-specific histone demethylase 1A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 492 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF01266: DAO" amino acids 23 to 253 (231 residues), 34.2 bits, see alignment E=4.4e-12 PF13450: NAD_binding_8" amino acids 26 to 83 (58 residues), 41 bits, see alignment 3.7e-14 PF01593: Amino_oxidase" amino acids 31 to 101 (71 residues), 38.7 bits, see alignment E=1.7e-13 amino acids 184 to 468 (285 residues), 135.8 bits, see alignment E=5.6e-43

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (492 amino acids)

>mRNA_7571 K11450 KDM1A, AOF2, LSD1 lysine-specific histone demethylase 1A (Rhodosporidium toruloides IFO0880)
MAALAPLAAPSTPLSGEPEPAYDVVVVGCGMAGAVAARQLAGHRVALLEARNRVGGRIYT
AGEVEGVPQPVDLGGSMIHGFREGVPTAKLITHELGMDVHVPQGAKGLVYGLNGPLAEAE
ATSLFATSAQNAFSPPSGVAADASIASLLIPTLKSDPRLVALARTAEIGAGVELEGMSAK
YAGFEQGFKGTDGFPEGGYGEVMKNLVADIKAAGGEVHLGVEVTKIEDLGADKGVKLETK
DGRTFTAKAVISTIPLAVLQQSPPTFQPPLSSLYTSAIERMRTGSLEKIVLSYPSAWWPS
PDENGSFLLLPLHDPSVPLDDAKPASLRDLFSRIVIPVSSFQRIASAPHPTLLAYIGATA
ARYIAAYPADDVTSAFHDYLVSRLSPSALPPAPTVKLVTEWQRDPFSRGATSTPVPLTQS
KDGERASPLDFIIVSRPIWDGRLGFAGEHTDLDNHGSVAGAAISGQREGLRVKELLERLA
EQEANEQGKALL