Protein Info for mRNA_7613 in Rhodosporidium toruloides IFO0880

Name: 15981
Annotation: HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 689 PF12937: F-box-like" amino acids 165 to 222 (58 residues), 27.4 bits, see alignment 1.3e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (689 amino acids)

>mRNA_7613 HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047 (Rhodosporidium toruloides IFO0880)
MSTSSSSTFTFARNSPPVKTSFTPQASGSAQSTPRRRTPLAPRPSSKRSPAVTRAWNRKL
SFSSPDGTPAPSGTSTPVSPETTSELVGPGGFTFSPTKAPATPATSAPAEPRRDVEKDVF
ALDDMRMDIDEIAGMPVSPPPRVSETSWPTVTTRKMRSRRVKTGINDLPDELLLRIFGFL
NDQQGFRPLPTKYSTTPGWYTPPLRVALVCKRWLPLVRHLAYRFLKISHLARITSLYQSF
AANADLPASVRHLAVDLPFSAAEKLDLVPSNEQPPTSREADSDLEPGARSSTPFSSPTKR
SKSPPTYADQLRAVFQSCAHLLSLDISGVLPATLFTSSSNSLSALHHLHQLRLSTVTALF
LHGSADTVLSSTSLRDALLALTGLRRLTLKGYVSSASTSLDFAPKTTPSGHLARPLPSRV
RAHALVPLERLTLVECNMSPTDLRALLEHVQPDKLRHLAVDDVFTAAQARKYREEGLWAA
PTVESLQDVASLLKTSLTTLRVTLFNYPLVTARDPTVTTSPPLSPVRRRNAPAETRPKHV
LDGFIAQLENLVVLDVGGTVVTTILFEPISSAPPSTPRSQSETRFLLPSSVRHLLIRSCP
DIKPSTLVTLISSSPSTSRLSTFGGTEHGWASPSACWELQQACWKAGVRWISGAQSGIVV
PVGKDADASATSYVGMNVRREGERSGGMW