Protein Info for mRNA_7615 in Rhodosporidium toruloides IFO0880

Name: 15983
Annotation: K06678 YCG1, CAPG condensin complex subunit 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 959 PF12719: Cnd3" amino acids 585 to 859 (275 residues), 280.6 bits, see alignment E=1.4e-87

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (959 amino acids)

>mRNA_7615 K06678 YCG1, CAPG condensin complex subunit 3 (Rhodosporidium toruloides IFO0880)
MPARLKRAQPAEPDSLESLAPLLDEHLSALFTAAQHTTASHRKHINTLHSVFLRCAKVTT
LSADGRFTRLSGEKAFGEKFREMVTHPLGVKKGADQGDRVIKFIAGFVGFAVEYDFEQLE
ANGDDDDEDEDGPASRLVAQLLAFLLRGFQAKNKIARYRCVQLVALMINSLGEIDDESYH
TLKAALLERIRDKEASVRQHAVVALSKLQDADEGAGDSDDDSDDEDEGKEKKSVTEVLIG
VLNHDPAAEVRRAALFNLIPSATTLPHLLRRTLDIDTTNRRLAFSHVLVEIPPRSLTKTQ
RREIMGRGLRDREEAVRKAAKKLVAKWIEQVDKDEGGEATIEAFVGFFDLFDEEGQKVAE
KALEALFEVRPDLIQDVEFSDDFYQTLTPSTAFLVRVYLNYLRTVDSPLLSDLEPVVTAL
AFHLQAAWTQLVVALEADERDEAKEAREEFIVGELVGIAVNLDYGDEIGRRKMFELMREM
LQHSLLPPSLIPKCLDVLLKGTSERDFMRIVVETVQSLRNDSHLVTDDSELGEQSDDSSD
DSDELEYEGDAEERAARRRLKLAKKGKRAVQEPQQAERRKELDLRCLFVVKALLERVMSA
LQENSMLHGLVAELIVPSVKTKDYEVRAQGLICLGLCCLLDKSMALDSFQLLARQSEATE
GELQIKVLQTLFDLLVLHGINFGEERGFGTDIILGFLGSSLDQEDPKAAATAVVGIAKLM
LSGMVTDEEILARLVLLYFAGETADNPELRQCLSYFFPVYCYSNPQNQRRVSTVMIKTLD
VLRSVYDELKDKSTMVTPLQIGSQLVDWTDPQKVIESDSVQPDETVQVDLALKMLKALYK
SEEKDARKLWCQLLPKLYIPDETDDLKIKALMVMIEELKANRPLADAVPRNALNRFEASL
TKTFGPRLEALEDAQVEESDDVRLVREWIAKVEGEEEEFEGEDEEEEEEESEEESEEEE