Protein Info for mRNA_7618 in Rhodosporidium toruloides IFO0880

Name: 15986
Annotation: K14549 UTP15 U3 small nucleolar RNA-associated protein 15

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 555 PF00400: WD40" amino acids 116 to 153 (38 residues), 12.9 bits, see alignment 2.7e-05 amino acids 159 to 196 (38 residues), 24.7 bits, see alignment 4.9e-09 amino acids 331 to 358 (28 residues), 12.4 bits, see alignment (E = 3.8e-05) PF09384: UTP15_C" amino acids 409 to 546 (138 residues), 158.6 bits, see alignment E=1.3e-50

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (555 amino acids)

>mRNA_7618 K14549 UTP15 U3 small nucleolar RNA-associated protein 15 (Rhodosporidium toruloides IFO0880)
MADFSRLVVPKAAKTVVENQQQKESVYWRSFKSPVFLKSYAPITHVHFSPSHPHRYVVTS
GTRLQIYSPKTNRVVKTIARFKETATSGEIRTDGKLCVAGDEGGLVQVFDINSRAILRTI
RAHKQAVHTTKFSPGPGTQILTTSSDTTVRLFDLSTSAPLRTFSSHSDYVRTASFVPSSP
SLIFSGGYDSTVRLWDARVPDSEGSGCVWIGRHGKPVDQVLVGEQGTMAVSAGGPILRVW
DLLGASTSRSSGAGAVMEGGDDAATGKEEEEVDTGTAYCLKALSNHQKSIMALCWAEAEN
GEKRVLSGGLDGLVKVYDPQENWRVRHTMRYGGQVMSLAVSPNNSHLVAGLSDGSLSIRT
RAGVGRKAGVPVESVTPSYDAILAGMGHGGVVYSGKQAGEGLRATFEGETKVTKERRKKL
SEWDRMLKNFRYGDALDSVMRRDVTPATAFALMEELIRRDGLAIALANRTDVSLEPVLSF
LVKHITDPRYCVLAADVASVLIDIYTPTLGLSPLIDTLFTRLRRKLDDELDFHRELTMVQ
GALDMVFASSAQPRA