Protein Info for mRNA_7623 in Rhodosporidium toruloides IFO0880

Name: 15991
Annotation: K19564 CTR, HNM1 choline transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 502 transmembrane" amino acids 29 to 53 (25 residues), see Phobius details amino acids 59 to 80 (22 residues), see Phobius details amino acids 113 to 139 (27 residues), see Phobius details amino acids 151 to 170 (20 residues), see Phobius details amino acids 182 to 199 (18 residues), see Phobius details amino acids 219 to 239 (21 residues), see Phobius details amino acids 260 to 282 (23 residues), see Phobius details amino acids 302 to 326 (25 residues), see Phobius details amino acids 361 to 380 (20 residues), see Phobius details amino acids 386 to 407 (22 residues), see Phobius details amino acids 424 to 448 (25 residues), see Phobius details amino acids 460 to 480 (21 residues), see Phobius details PF13520: AA_permease_2" amino acids 26 to 466 (441 residues), 173.5 bits, see alignment E=7.3e-55 PF00324: AA_permease" amino acids 47 to 472 (426 residues), 70.8 bits, see alignment E=9.5e-24

Best Hits

KEGG orthology group: None (inferred from 41% identity to ure:UREG_06167)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (502 amino acids)

>mRNA_7623 K19564 CTR, HNM1 choline transport protein (Rhodosporidium toruloides IFO0880)
MDKHEKDLGSNVAAVSPATTTLKRNIGPLSIVGLGMSICNGWAAMSSTIVVGLSQGGTVT
VLYGLIGVAIINVFLALSLGEFASAYPSAGGQYVWSAILAGPRTRRAISFATAWTNIFSW
ITITASVVIILSEVIFAVVQLYHPDFVIQRWQVYLIYLATNLASVAWNIFAAARTPWVGK
AFFYFSTLVFLVITIVVVAKAPTYNDNKFVWATYTNEIGWSSSFVVVMTGLVNPSYLYAG
LDGAIHLVEEVKRPEKAVPLALLSTVGMGFVTGMAISVTLIYCVQDLDAALASELPFLKI
IVQATGSKACGTVLMVAFLLCLFVSANSVHQSTSRLIWSFARDNGLPFADKLTYVHPHFR
VPILPLLLSGLGVTILGALYCASTTAYGSIISTCIILGNISFAIPATQLLLRKREMKRDR
WMRLGWLGGVSNVVTILFCLLTTVMWLFPLTPNPKPIEMNYGAAVLGGMALLALLDFLFV
RKSFHGPTSDELFAKISNVEEE