Protein Info for mRNA_7632 in Rhodosporidium toruloides IFO0880

Name: 16000
Annotation: KOG0383 Predicted helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 1986 PF00385: Chromo" amino acids 686 to 752 (67 residues), 26.7 bits, see alignment (E = 1e-09) PF00176: SNF2_N" amino acids 937 to 1214 (278 residues), 188.9 bits, see alignment E=2.8e-59 PF04851: ResIII" amino acids 937 to 1084 (148 residues), 29.4 bits, see alignment 1.9e-10 PF11496: HDA2-3" amino acids 1152 to 1386 (235 residues), 48.3 bits, see alignment E=2.1e-16 PF00271: Helicase_C" amino acids 1240 to 1351 (112 residues), 68.9 bits, see alignment 1.2e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1986 amino acids)

>mRNA_7632 KOG0383 Predicted helicase (Rhodosporidium toruloides IFO0880)
MARSVSPSAPPRSKDRDQSSRPSSAIATSSFLHGSPSRSGSTNADSVASKGMNGSTGPAA
TAGEDTEEKQDAPKVARILSVQQTEGVGKTYLCVLEGSGKKVQRTRSQLRDVAPDLLSAF
DSSQKSTSATTSRSSSSDSDAAVAAVLRGGRGASRAAKASTKGKGKERVVHDDDEEMQDA
DDGAGGSSDEPDNSADETMDEPSSTSASENEDSEDDMSDDELAIGSRRRRLRKGKAKAVK
PTRRSGRGEGKKAKRYDFGDGNGPSDESEAESVSTTTSSSGSMRETRASKARETRSSPEE
DESRSGESSDELSMTARPRRIQPQPPRSPAKKPHVPLRKSTAAVVDSEEEGEEQDELASN
SAQGEVQEVEWRPQDQHRETCAKCGQASASELFRLLNERKRRKKPGRKRKRDILEEDTDA
EEERLEKLGAWVECGVCCVAYHFGCLPASQKREITDQLKDEHLALYETADAGDKPSTLSV
TTGTTTTGSSLTPVTTTTSAATSKSGSPRLDIPKREKYELDPERVFTMRKCPSCKKMGGR
RCFVCGVSGKVVTKREREELGKKGDESAEGAEQTAKPDEASKEEDGDADATMTDETAEAS
KKSEDTQIVPGQMFRCSRCKRVAHYGCLDNDEPEWTFEQHCQSYFDWQICHDCYNFNVPL
DVILAWRETQPVADVGPDDVESDDEVVERIEGEKRVDEKTKKVVVLPSPKDLRANAEYLV
KWQEMSYRHLVWVPHAFLAAAYPSKLANFLSRGSTVTFEPANDDDDEDADPTDVKDENEE
APLPDPNALDRIPKTWRTVDRILDVWFDHPKKEGEHVGFTEYRKKLPQDADESIKLVSQC
YIKWGELPYAQSTIEAPPKEDEEGHDAFAKAYKAFLAASEPSMSVPTLNKKQMDELDRPR
DPKRFKPLEAQPDYISGGKLMDFQIAGVNFLRYQWWQRKGCILADEMGLGKTCQIISFLS
YLNRDEGARPFLVVVPNSLIGNWMREFEKWAPTMRVVPYNGDGESRKIIEDYELFDSRGS
LKTHVVLATYEAVQGNARVFRRVDRWDCLVVDEGQRLKSGKDSQLYNAIASLRIAQRVIL
SGTPLNNNLRELFNLLAFINPTDFTDVEALTRRFVELTPELVEEVREMLKPYFLRRTKDL
VLNLPPLLEVVVPVSMTVLQRQIYRGILERNAGAIRSIVQKSGTSTNGRTKPKKSNFSNI
LMELRKALCHPYLVDDDIEPRSVTPQQSQVNLTEASAKFVLLARMLPKLKAAGHRVLIFS
QFKLTLNIVERFLAGLELKYLRLDGDTPQLERQRDVDKFNAPGSEYFAYLLSTRAGGVGL
NITSADVVIIYDQDFNPQMDIQAISRAHRIGQTKPVRVFKLLVKGTCEEKILNAGNKKRG
LEHLIIQRIDAQDESEDMESMLQFGAKAVFDEAAAEAAAIRYNDSDIDALLAKTAEPVEK
ESDSSATFSHAQIWVRENGELDAAPQEAACGAADSTEDLHDFWSKVVEQQQEAEKASKAA
QAATVGRGKRRRAQVNYKIGGESPNKQAKKLDSKSPSAHDHSSGDEYRMRPDELDSDDEA
PVAMDIDEGLQEIEGVAKPPPLARLDPAQTPGATSSDASKSKARKGVVTDPAELAALRAE
KAKKRTDAIDALSRAAGDLNDKTALDLLASARSSASRKEQTSLLRQATHRIESLRQQLRQ
HPLAANSSVVNRPQPMASSSGSQAKAAPSVSQAQPGPPSERATAQASKVPAKAQQIAGGT
QLSEADAQRQAKEREEAKRLRREKRARELEKQRQANAAATFTAANPPAASVFAAPARSGG
ESASAWKRPTPPSTASSRSPTLASPSALKPFSLPPQASTSASAGGQSKSPPNLAAPAMAP
SKSGDKSDSSKSSTSSSSKYKQSTLSFGRPAPKALFNGASMAPAPAKASTPSMFAASGSF
KRQPPPSSAASGSFKRQSPPSSAATGADAQPKPSTAVAKPPPAVPQPVPVAKKTEILVIS
DSEDDS