Protein Info for mRNA_7637 in Rhodosporidium toruloides IFO0880

Name: 16005
Annotation: K12197 CHMP1, VPS46, DID2 charged multivesicular body protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 207 PF03357: Snf7" amino acids 11 to 165 (155 residues), 44.3 bits, see alignment E=8.1e-16

Best Hits

Swiss-Prot: 59% identical to CHMP1_DICDI: Charged multivesicular body protein 1 (chmp1) from Dictyostelium discoideum

KEGG orthology group: K12197, charged multivesicular body protein 1 (inferred from 71% identity to uma:UM05607.1)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (207 amino acids)

>mRNA_7637 K12197 CHMP1, VPS46, DID2 charged multivesicular body protein 1 (Rhodosporidium toruloides IFO0880)
MSSGLEKSLFQLKFTTKQLQKQSRKASKDETTEKAKLKKALQQGNTEGARIYASNAIRKK
NESLNLLRLSSRIDAVATRVETAVTMRQVTGSMAAVVKNMGRAMQDMNLERISAVMDKFE
SQFEDMDVQTGYLEGTLSSDTAIAAPSDQIDLLMSQVADEAGLEVAHELQGKSTDKVPVL
EEQKQAVTEEQEDALAQRLRALRPAMS