Protein Info for mRNA_7649 in Rhodosporidium toruloides IFO0880

Name: 16017
Annotation: K13346 PEX10 peroxin-10

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 348 transmembrane" amino acids 82 to 100 (19 residues), see Phobius details amino acids 162 to 178 (17 residues), see Phobius details amino acids 214 to 225 (12 residues), see Phobius details PF04757: Pex2_Pex12" amino acids 10 to 233 (224 residues), 111.4 bits, see alignment E=1.9e-35 PF13920: zf-C3HC4_3" amino acids 293 to 338 (46 residues), 42.5 bits, see alignment 1.6e-14 PF13639: zf-RING_2" amino acids 295 to 334 (40 residues), 34.8 bits, see alignment 6.1e-12 PF13923: zf-C3HC4_2" amino acids 295 to 333 (39 residues), 36 bits, see alignment 1.7e-12 PF00097: zf-C3HC4" amino acids 296 to 333 (38 residues), 33.2 bits, see alignment 1.3e-11 PF14634: zf-RING_5" amino acids 296 to 335 (40 residues), 28 bits, see alignment 6.2e-10 PF14447: Prok-RING_4" amino acids 296 to 338 (43 residues), 30.6 bits, see alignment 8.8e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (348 amino acids)

>mRNA_7649 K13346 PEX10 peroxin-10 (Rhodosporidium toruloides IFO0880)
VVRANQKDLYYLSQLSERIEDVARSFLGTRWLQTWSKELQHGSRLAYFGLTTLLGSQTLG
EEYCDIMQYQNKDRRPPTLSRRAALVALHVLFPHVLGRTYANLRRSLVHRHEATQTSQAE
IDSLFPSSPPPPAKKGVVDRWVDRLASVAKDLPSFETLTEDYLRSVHLAIFYLFGRYYSL
SKRATGIRFISMQGRRAKALSGSQNSPAPSSYEVLGVLMGVQLVVRGLLAIRRHRAAAAL
ADPNAVEKEKEQERQRQRRKKRFLIDGRPLATVVFDPDDPEQAAPYPDEEDNERRCTLCL
GTRRDATATECGHVFCWECVVGWAREKAECPLCRQGISLSKLLPLRNL