Protein Info for mRNA_7653 in Rhodosporidium toruloides IFO0880

Name: 16021
Annotation: K15216 RRN3, TIFIA RNA polymerase I-specific transcription initiation factor RRN3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 917 transmembrane" amino acids 250 to 271 (22 residues), see Phobius details PF05327: RRN3" amino acids 96 to 815 (720 residues), 599.7 bits, see alignment E=2.9e-184

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (917 amino acids)

>mRNA_7653 K15216 RRN3, TIFIA RNA polymerase I-specific transcription initiation factor RRN3 (Rhodosporidium toruloides IFO0880)
MVAPSAPTAKATAHSRPKQIKRTRMPPPASVAAAPPQLSSVVKGKRPRPSDGVSDLEKEK
PRRVKSLRGQKRSEATEGRSKEAAAALAAGDGGGAYRRVMFASFINQAFEKRYKGDNEEY
NQIIGQFRALLPSATASQTASTSSGQPTVTPLTQLRAWLEALTSVVSKLDQSHAPLVETI
LAVPWAVMEDAFVSAYMRFVGAIVSARPEWLKGVLDKCVKGFKYRSPYTQASQHALPHLT
RRLVYTRIHALLRVLLSLVPTLSPSLSPLLASHFPSKREPRAAQICYIDNLLLLTEYCSA
LSEDVLTLVVERALNIDVEIQGEPEDWEDVEEEMMAAAEASEGVEGKKRLVDGAVNDLVD
RPVEEDPADSDSDSDDDDEEGGIDLDNLSSDDDEPDPVNDEDAAKRANGAKQGMSEAAIR
KVLDSRAKLDGILKVILDHLASAHADKRGLERNNTSTVQPPATPTTDVFDKAFAAAPVPA
ESGSREATPTADDVLTADVVERRLNLFRTLLDIFDRTLLRTFKTRNVQFVLFYLCSLDSA
STDHFIGVLLGRALFDQDAPPVTRVAAAGYVASFIARAKYVDAAMTRKVVRHLCGYLEGQ
MEDYARTSALATSIAGAKAPGGGSELPVFYAVAQAVFYIFCFRWKDLLDEDDADDEAALF
GLDAGRRWMMGLETVKKAVSSSFNPLKVCAQPVVNQFASIAHKTGFMYCYAILDSNRRAN
SYRDASAASTPTQPMPPPPLRSVSTSSLLNTLTAAQLHLSTPSPSGTPGPPSIPATASRQ
LIVAEEMDSFFPFDPFKLPLSSAYIDGIYREWEGADDDESTTSGDASSSVADSDDDTGES
DATTGDEDEDEPAWVKTRGGLAVPGSGRPGAEDDDDEVSRSFEAMSLSLSPQYESFGGRR
RQELEQRSAKAATKVAG