Protein Info for mRNA_7655 in Rhodosporidium toruloides IFO0880

Name: 16023
Annotation: K12194 CHMP4, SNF7, VPS32 charged multivesicular body protein 4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 220 PF03357: Snf7" amino acids 21 to 193 (173 residues), 134 bits, see alignment E=2.2e-43

Best Hits

Swiss-Prot: 58% identical to SNF7_CRYNB: Vacuolar-sorting protein SNF7 (SNF7) from Cryptococcus neoformans var. neoformans serotype D (strain B-3501A)

KEGG orthology group: K12194, charged multivesicular body protein 4 (inferred from 58% identity to uma:UM05062.1)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (220 amino acids)

>mRNA_7655 K12194 CHMP4, SNF7, VPS32 charged multivesicular body protein 4 (Rhodosporidium toruloides IFO0880)
MSGWLSYLTGRGQSTRDSTRESIVKLREHLLMLDKKEEYLGKKIDDELRKAKANATSNPR
VAKQALRQKKLYEQELESIAGRKMTLTTQVNAIESANMNKETLEAMKQGAEVLKNMYGKL
NVDKVDATMDEVRNQLELTNEISQAISDPAGMGIDVDDQELADELAELEQEELNKRLAGA
EAAPLHSPAAAVPAAKTPAQRIEEDEEEAELRELQAQLAM