Protein Info for mRNA_7665 in Rhodosporidium toruloides IFO0880

Name: 16033
Annotation: K13119 FAM50, XAP5 protein FAM50

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 325 PF04921: XAP5" amino acids 97 to 321 (225 residues), 290 bits, see alignment E=1.1e-90

Best Hits

Swiss-Prot: 50% identical to FA50A_DANRE: Protein FAM50A (fam50a) from Danio rerio

KEGG orthology group: K13119, protein FAM50 (inferred from 59% identity to lbc:LACBIDRAFT_292336)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (325 amino acids)

>mRNA_7665 K13119 FAM50, XAP5 protein FAM50 (Rhodosporidium toruloides IFO0880)
MSAQEAMRIAKLEKKRKEMMDGFAAQKEDLTATRNRTGSDRFVGKTEDVQETLKKSTYGL
VQLSEFKETREKLEEQARKEAAGAAEVKDEERKVKKKKKEKGKVKLSFAGDDGDEEDAES
FKPKKKGESPNGEDAEPPSKKPKLGKNPTVDTHFLPDREREEAERKERDELRKKWLKMQE
DMKQEPIEITYSYWDGSGHRKVVSCKKGDTIAQFLDKCRQQFPELRSVSVDNLMYIKEDL
IIPHHYTFYDFIVNKYRGKSGPMFNFDVHDDIRLTHDAKIEKDESHAGKVIERSWYNRNK
HIFPASRWELFNPEVQREKYTIRGS