Protein Info for mRNA_7699 in Rhodosporidium toruloides IFO0880

Name: 16067
Annotation: K11681 SWR1 helicase SWR1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1761 PF07529: HSA" amino acids 462 to 526 (65 residues), 54.4 bits, see alignment (E = 2.5e-18) PF04851: ResIII" amino acids 927 to 1087 (161 residues), 38 bits, see alignment E=3.6e-13 PF00176: SNF2_N" amino acids 940 to 1227 (288 residues), 215.9 bits, see alignment E=1.4e-67 PF00271: Helicase_C" amino acids 1477 to 1589 (113 residues), 71 bits, see alignment 2.2e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1761 amino acids)

>mRNA_7699 K11681 SWR1 helicase SWR1 (Rhodosporidium toruloides IFO0880)
MARKARRSTAKAAAAEPADPPPPADQDGEKSTTGTAEGVATTATGVGEGQLSDGAALDPS
GAVGGEKSHLEGVPADASTPMKLDAAAEGHSDGSAAVVNGATDASAAAQPASAAIAPPVF
ASPANLPPIPSTSQQPPPKREYTAEEVQAWREQQIDAKQVELAEIVDRHDDFVRELFHLD
RFVTLVGYDPAVAKADRSDVFQSFQANYDLFLNATPDGAAEGSGRRGTRRATTERKIGAL
ATPDTGGRWSDPKGKGKAREDSSGPMFEVGGSGRAGGKKAVGPRGKMAGSGSPAPSSYYG
GGSPSPAPSADTPYKKRPSDVLTPSRSTSQIPFNLPPLPALPVGIGYKPVVANLADLPGM
LKDDLPPLSPRSVKRRRLYAASDVTYSHMSQLPPDPEFDFSLPAFLSSWVSLDDETDIAP
PPPEEELDARAEYEHDILQQVEAIRAEGRELCNPDRTQSAEAKRPKDHQDWLVDHALYFS
QLVMQERKSHIALARKTARMVMKHFEEIRGKEDREQKEIERNQKALSRWTLREVRKKWKM
AVNVVRARRKAEQQKEAKRLGKQQLDLMLNKSTTMLQAQQQEMAGEGSSDEEEEEDEEGK
DADGEEEGEEEDEEDAESTSQAASTTADSSPAATPPPKANGRRARRTARSRLSTSATPGD
ADEDAGDAFAGGEDDAERDKEDSAFAAEMEAEDEDDDDEMAGLAAEADMPIEELLRRSGY
AAMMAEEAEGGGEAEEEDGEDDEEEEEAEDDASMADVVDDAASEQVSAVNSTSSTNAAPS
PSTPGTSAPAGPELTAEEKEAEAMSEFGSEAGDDERDDEDVRMAKEMEAEEGESDDEEMK
GLAAEADMPIEELMRKYGYGGGEPGDAAAREPDDAVKAEEEERKVSPEPEEEEGDEAKGE
DAVEEKPEDGADRQIVHLKPPFLLRATLRPYQQAGLEWLASLYTSGVNGILADEMGLGKT
IQTISLLAHLACDKGQWGPHLVVVPTSVMLNWEMEFRKFFPGFKLLTYYGTQKERKKKRE
GWNTENAFNVCITSYQLVLADQHIFRRKPWHYLILDEAHHIKNFRSQRWQTLLGFNARHR
LLLTGTPLQNNLMELWSLLYFLMPHGLITDGSGPFAEHADFQAWFSNPMEKAIESGEVMD
AEMQATVNKLHTILRPYLLRRLKAEVETQMPGKTESVIYCRMSKRQRFLYDDFMSRAQTR
DTLASGHFLSIINCLMQLRKVCNHPDLFEVRPIVTSFSMQRSVVSGFEPSELLVRKRLLE
DEPIAKMDWTTLTLVKPWQEETTSTVAGQIRLHLDASTSFPYLHRVPMDVNLAAPPPRDT
KTIAGWRRYRAWQEHHAILSRLNRLAVVNRRRCLSSTPYFGADLLHLLREPSRSSQLLPT
DAIRPDREALSRPSIVPNMILSHEQRASALEEAISLFSFATPKVRAHDMKHHALPGMSQD
DVDDIEEEAPAELLHVASTKLTVAFPDRSLLQYDCGKLQKLDELLRECKAGGHRALIFTQ
MTKVLDILEEFLSYQGYRYLRLDGSTKIEQRQALTERFNSNDKILCFISSTRAGGLGINL
QGADTVIFYDSDWNPALDRQCQDRAHRIGQTREVRIWRFVTEHSIEENMLKKANQKRKLD
QMVIAEGEFTTDHLQKLDWRDYLDDGQLAELGVDAGSNEQGDTGTGASAMQSAAEIRQAL
AAAEDAEDVAAAKAAEQEIEIDRTDFGNEGQQASRTAATFGKDGLVNTTAAGQKEEEEDP
LAGTIDGVMVRWVEEDWDYFA